New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =370 (0.780)21 (0.060) 12/90 NT 5.5% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 422 (1.110)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 667 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740
                                                                   |                                                                   
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCT                                                                  <  1:5729486‑M1/68‑1 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:362225‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:20771442‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:12116193‑M1/1‑65 (MQ=255)
   aGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     >  1:2518393‑M1/1‑65 (MQ=255)
       ttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTgcg                                                               >  1:21377727‑M1/61‑67 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccg                                                            <  1:39200583‑M1/10‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:20008019/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:35536190/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGAGCCGCt                                                          <  1:32346172/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCAGCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:22131473/68‑1 (MQ=255)
             ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTa                                                         >  1:18411976/1‑67 (MQ=255)
                   ggCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAAc                                                   >  1:13182003/1‑67 (MQ=255)
                    gCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTc                                                 >  1:25994660/1‑68 (MQ=255)
                      aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc                                               <  1:34078376/68‑1 (MQ=255)
                         ggAGTGAGGCATCTCCCACAGGCTCAAGATAGCAAGCAGGATCGCTGCGCAGCTATCGAACTCACCgg                                            >  1:21781734/1‑68 (MQ=255)
                           aGTGAGGCTTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:22624577/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATATCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:1036926/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCCCCGGtt                                          >  1:3734182/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:25614061/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:20471126/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg                                            <  1:7867074/66‑1 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:8581456/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:27564680/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:35887634/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:23501631/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:14340749/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:4181429/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:10039690/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:37606917/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:7653298/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:31490902/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCAAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:31197910/1‑68 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:39506977/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:1286040/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:284668/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:33498874/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:8913562/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:18570988/67‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:36958090/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:4045709/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:8112275/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       <  1:32802233/68‑1 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAc                                        <  1:15465009/67‑1 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGGTATCGAACTCACCGGTTACCGc                                     >  1:22950418/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:31806543/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:2634572/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:30431436/1‑68 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:35278657/1‑67 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:24105665/1‑67 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:11768546/1‑67 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca                                    <  1:8309050/67‑1 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     <  1:3099751/66‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGCTAGCTGCGCCGCcggtgatcggctactgtggggtaa                                   >  1:36620643‑M1/1‑43 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  <  1:27358466/68‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  >  1:38817901/1‑68 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:11245862/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:29330910/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:30651912/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:16352709/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:32989636/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:24937302/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:8501446/68‑1 (MQ=255)
                                       gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               >  1:5031756/1‑67 (MQ=255)
                                       gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               >  1:16824650/1‑67 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGcc                            <  1:17434114/68‑1 (MQ=255)
                                         cacaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGc                             <  1:7007089/67‑1 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgag                           >  1:34677382‑M1/1‑36 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCAGAGTAGCCg                           >  1:6661452/1‑68 (MQ=255)
                                          acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           >  1:28178437/1‑68 (MQ=255)
                                            aGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGa                          >  1:33215713/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctacggtgcggtaaccggtgagttcg                       >  1:10813494‑M1/1‑32 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCAGCGCCGCTATCGAACTCCCCGGTTACCGCACAGTAGCCGATc                        >  1:37824926/1‑67 (MQ=255)
                                                 gAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcg                    <  1:11530322/68‑1 (MQ=255)
                                                 gAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACcg                    <  1:19172570/68‑1 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagc                  >  1:9569354‑M1/1‑27 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGCTCACCGgcg                 <  1:9136233‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:28807310‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:29094863‑M2/68‑4 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:12425212‑M2/1‑63 (MQ=255)
                                                        gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCCCAGTAGCCGATCACCGgcggcgc             <  1:11056397‑M2/68‑8 (MQ=255)
                                                         ccAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca            <  1:35037734‑M2/68‑9 (MQ=255)
                                                          cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCCCCGgcggcgca            >  1:26892872‑M2/1‑59 (MQ=255)
                                                          cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgca            >  1:4543451‑M2/1‑59 (MQ=255)
                                                          cagcagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc             >  1:32630728‑M2/1‑59 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg         >  1:13560940‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:4836962‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:29758417‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:29959779‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:6249475‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:17930688‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:15041301‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:14002121‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       >  1:33769135/1‑68 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:23774594/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:15888074/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga    >  1:38425361/1‑68 (MQ=255)
                                                                  tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag   <  1:38267644/68‑1 (MQ=255)
                                                                  gCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag   <  1:18879917‑M1/67‑1 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGAAGCGCCGgaga  <  1:7401306‑M1/68‑1 (MQ=255)
                                                                   |                                                                   
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.