New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =370 (0.780)21 (0.060) 12/90 NT 5.5% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 422 (1.110)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 725 total aligned reads displayed.

AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800
                                                                  |                                                                  
tccggcgctgcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgc                                                                    <  1:31671756‑M2/1‑1 (MQ=255)
agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc                                                                    <  1:22403519/67‑1 (MQ=255)
agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc                                                                    <  1:33609071/67‑1 (MQ=255)
 ggATCGCTGCGCCGCTATCGAACTCCCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCg                                                                  >  1:35275593/1‑68 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc                                                                   <  1:15888074/65‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc                                                                   <  1:4669858/65‑1 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:29493090/1‑68 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:31463543/1‑68 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGga                                                                >  1:38425361/1‑68 (MQ=255)
   aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGAGCACCGGCGGCGCAGCGcc                                                                   <  1:12642030/65‑1 (MQ=255)
     CGCTGCGCCGCTATCGAACTCAGCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:10062375‑M1/1‑68 (MQ=255)
     CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              >  1:25996867‑M1/1‑68 (MQ=255)
      GCTGCGCCGCTATCGAACTCCCCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga                                                              <  1:25016088‑M1/67‑1 (MQ=255)
      GCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCggagc                                                              <  1:1650317‑M1/67‑2 (MQ=255)
        tgcgccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgCCGGAGAGCg                                                           >  1:13470984‑M2/59‑68 (MQ=255)
         GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa                                                          >  1:23926640‑M1/1‑68 (MQ=255)
          cgccgccggtgatcggctactgtgcggtacccggtgcgttcgataccggcgcagcgCCGGAGAGCGa                                                          <  1:34348061‑M2/11‑1 (MQ=255)
              GCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCaa                                                     >  1:12228605‑M1/1‑68 (MQ=255)
                tATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAAt                                                    <  1:174634/67‑1 (MQ=255)
                  tCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCaa                                                 <  1:39073609/68‑1 (MQ=255)
                   cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc                                                >  1:14522140/1‑68 (MQ=255)
                   cGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAAc                                                <  1:21847574/68‑1 (MQ=255)
                     aaCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:13331612/1‑68 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGATCCAATCAACGt                                              >  1:1068057/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              <  1:34819220/67‑1 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:18779608/1‑67 (MQ=255)
                      aCTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGt                                              >  1:20775786/1‑67 (MQ=255)
                       cggctactgggcggtacccggcgagttcgatagcggcgcagcgCCGGAGAGCGAACCAATCAACGTGc                                            <  1:15181747‑M2/25‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:37982366/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:4989078/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:9273719/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:31990510/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:309067/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:3229362/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:33014573/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:9063858/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:38690399/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:12938985/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:25767473/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:17934957/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:30492514/68‑1 (MQ=255)
                       cTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGc                                            <  1:37619688/68‑1 (MQ=255)
                         cACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCg                                          <  1:19388705/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:6976459/68‑1 (MQ=255)
                            cGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:6387219/68‑1 (MQ=255)
                            actgcgcggcacccggtcagttcgatagcggccCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAg                                       <  1:2984365‑M2/35‑1 (MQ=255)
                             ggTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGCGCGAACCAATCAACGTGCCGTAg                                       >  1:24136502/1‑67 (MQ=255)
                                 aCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACaga                                  <  1:734846/68‑1 (MQ=255)
                                   cGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGt                                <  1:19623484/68‑1 (MQ=255)
                                     cacaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTg                               >  1:21484272/1‑67 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             <  1:9652810/68‑1 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:19926156/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:16901966/1‑68 (MQ=255)
                                      acaGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGc                             >  1:24798061/1‑68 (MQ=255)
                                        aGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           >  1:18290888/1‑68 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCg                            <  1:30194118/64‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:8061734/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:8763027/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:32677982/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:36332673/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:27941777/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGttt                         <  1:17745608/67‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGtt                          <  1:7189968/66‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:27259547/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:11968056/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGt                           <  1:4152847/65‑1 (MQ=255)
                                           aGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTc                        >  1:757494/1‑68 (MQ=255)
                                            gCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCa                       >  1:22167498/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTGATg                     >  1:22928304/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCTTg                     >  1:37060921/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCAt                      <  1:29084306/67‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     <  1:19079661/68‑1 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     >  1:4319341/1‑68 (MQ=255)
                                              cGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATg                     <  1:14188177/68‑1 (MQ=255)
                                               gATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    <  1:13991136/68‑1 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:5639866/1‑67 (MQ=255)
                                                aTCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGt                    >  1:23628531/1‑67 (MQ=255)
                                                 tCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGGTTCATGTAc                  >  1:5384588/1‑68 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:11074478/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:11327706/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:11595175/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:28200724/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:11796549/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:2527510/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:5973880/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:39480898/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:14822789/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:15586008/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:16189697/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:20426960/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:35912134/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:34037982/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTCGCGTTTCATGTACAgg               <  1:16622121/68‑1 (MQ=255)
                                                    ccGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCAGTAGACAGAGTGGCGTTTCATGTACAgg               <  1:6835986/68‑1 (MQ=255)
                                                     cggcggCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGc              <  1:21155590/68‑1 (MQ=255)
                                                      ggcggcGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCACGTACAGGCt             <  1:2659221/68‑1 (MQ=255)
                                                       gcggcgcagcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCta            >  1:13741952‑M2/12‑68 (MQ=255)
                                                              agcgCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACg      <  1:36627671‑M2/63‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:27625656‑M2/67‑1 (MQ=255)
                                                                 gCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGa  <  1:28739939‑M2/67‑1 (MQ=255)
                                                                  |                                                                  
AGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAATCAACGTGCCGTAGACAGAGTGGCGTTTCATGTACAGGCTATAAACGCCGA  >  CP009273/442668‑442800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.