| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2139980 | 269 (0.570) | 14 (0.040) | 9/94 | NT | 5.5% | coding (3234/3318 nt) | yegE | putative diguanylate cyclase |
| ? | CP009273 | = 2140007 | 257 (0.640) | coding (3261/3318 nt) | yegE | putative diguanylate cyclase | |||||
Only 100 of 444 total aligned reads displayed.
TCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGT > CP009273/2139913‑2140046 | tCGGGATGAAACCCATCGCCGGGCCAGTCGGTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGC < 1:11621028‑M1/68‑1 (MQ=255)tCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGC > 1:31939772‑M1/1‑68 (MQ=255)tCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGC < 1:30782756‑M1/68‑1 (MQ=255)tCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGC < 1:464065‑M1/68‑1 (MQ=255)tCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGC < 1:15200449‑M1/68‑1 (MQ=255) tGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGa < 1:26840475/67‑1 (MQ=255) tGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGa < 1:29423203/67‑1 (MQ=255) tGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGa < 1:16607025/67‑1 (MQ=255) tGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGAt < 1:39102459/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:38037674/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:38456772/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:2155400/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:20013779/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:17547767/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:11123972/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:30165415/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:29088807/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:8779873/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa > 1:13038537/1‑68 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:13299948/68‑1 (MQ=255) aaCCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:68654/68‑1 (MQ=255) ccATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGAtt < 1:1855063/68‑1 (MQ=255) ccATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGAtt > 1:25848648/1‑68 (MQ=255) ccATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGAtt < 1:25143480/68‑1 (MQ=255) tCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAt < 1:6065406/68‑1 (MQ=255) tCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTAt < 1:27298146/68‑1 (MQ=255) gCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATgg < 1:5659198/68‑1 (MQ=255) gCCGGGCCAGGCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATgg < 1:6440303/68‑1 (MQ=255) cGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtg > 1:8359693/1‑68 (MQ=255) gggCCAGGCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATgggga < 1:20914321/68‑1 (MQ=255) gCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGa < 1:36479835/56‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:20699381/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:34751885/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:23682851/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:29901961/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:33631443/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:7499711/67‑1 (MQ=255) ccAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATggtgagg < 1:4750121/67‑1 (MQ=255) tCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGAtt > 1:16111373/1‑68 (MQ=255) cGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGAtt > 1:3207591/1‑67 (MQ=255) gTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgc > 1:36101660‑M2/1‑66 (MQ=255) ttcccttAGTGATGGCTACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgat > 1:32418002‑M2/3‑62 (MQ=255) tACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgat > 1:30316958‑M2/1‑62 (MQ=255) tACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgat > 1:38783023‑M2/1‑62 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGTTGATTgccgatgc < 1:28454260‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:22342747‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:12579492‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:7839759‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:29269632‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:15917887‑M2/67‑9 (MQ=255) ccTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgc < 1:34943601‑M2/67‑9 (MQ=255) aGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgccagaa > 1:37469381‑M2/1‑55 (MQ=255) aGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCaa > 1:4369873/1‑67 (MQ=255) aGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAc < 1:9339522/68‑1 (MQ=255) gTGATGGATACGCTTTCTGGCATCGGCaatcaccgcaccataaatcagatcgaccccgatgccagaaa > 1:8097955‑M1/1‑27 (MQ=255) tGATGGATACGCTTTCTGGCATCTGCGTCGATCTGATTTATGGTGATGTGATTTCCGATGCCCaaac > 1:15682291/1‑65 (MQ=255) tGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAcc > 1:39186377/1‑67 (MQ=255) tGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAAcc > 1:10478484/1‑67 (MQ=255) gATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTgccgatgccagaaagc > 1:1241881‑M2/1‑52 (MQ=255) tGGATACGCTTTCTGGCATCGGCaatcacctcaccataaatcagatcgacaccgatgccagaaagcgt > 1:34313480‑M1/1‑23 (MQ=255) tGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTg > 1:12440483/1‑68 (MQ=255) tGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTg > 1:18876501/1‑68 (MQ=255) tGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTACGGTGAGGTGATTGCCGATGCCCAACCGCTg > 1:22108160/1‑68 (MQ=255) ggATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTgg > 1:7252049/1‑68 (MQ=255) tACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAt < 1:28532037/67‑1 (MQ=255) aCGCTTTCTGGCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatcca > 1:14367960‑M1/1‑18 (MQ=255) aCGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:33068904/1‑68 (MQ=255) aCGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:3730412/1‑68 (MQ=255) cGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:19466302/1‑67 (MQ=255) cGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:23282503/1‑67 (MQ=255) gCTTTCTGGCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatc > 1:31002489‑M1/1‑16 (MQ=255) gCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:13715399/1‑66 (MQ=255) gCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGc > 1:3166985/1‑68 (MQ=255) cTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:5829349/1‑65 (MQ=255) cTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGAttt > 1:24798086/1‑65 (MQ=255) tttCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCt < 1:20438680/67‑1 (MQ=255) tttCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCt < 1:5481498/67‑1 (MQ=255) ttCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTgg < 1:27862768/68‑1 (MQ=255) tGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGa < 1:22959315/68‑1 (MQ=255) tGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGa > 1:2612945/1‑68 (MQ=255) tGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGa < 1:18377506/68‑1 (MQ=255) ggCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagg > 1:10055950‑M1/1‑9 (MQ=255) gCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaaggg > 1:17786236‑M1/1‑8 (MQ=255) gCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagg < 1:9679838‑M1/67‑60 (MQ=255) gCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagg < 1:23827816‑M1/67‑60 (MQ=255) gCATCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagg < 1:31349657‑M1/67‑60 (MQ=255) gCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAt > 1:16907254/1‑68 (MQ=255) cATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAta > 1:23553309/1‑68 (MQ=255) cATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAt < 1:2405014/67‑1 (MQ=255) aTCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggta < 1:7930876‑M1/68‑63 (MQ=255) aTCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggt < 1:33516264‑M1/67‑62 (MQ=255) aTCGGCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggt < 1:28117526‑M1/67‑62 (MQ=255) aTCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAta < 1:32960357/67‑1 (MQ=255) aTCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAta < 1:12767992/67‑1 (MQ=255) aTCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAta < 1:36835347/67‑1 (MQ=255) tCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAtagt < 1:17212292/68‑1 (MQ=255) cGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAAtagta < 1:10694854/68‑1 (MQ=255) ggCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggtaaa > 1:31863535‑M1/1‑3 (MQ=255) gCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggtaaaac > 1:18024206‑M1/1‑2 (MQ=255) gCaatcacctcaccataaatcagatcgacgccgatgccagaaagcgtatccatcactaagggtaaaac > 1:35876303‑M1/1‑2 (MQ=255) | TCGGGATGAAAACCATCGCCGGGCCAGTCGTTTTACCCTTAGTGATGGATACGCTTTCTGGCATCGGCGTCGATCTGATTTATGGTGAGGTGATTGCCGATGCCCAACCGCTGGATTTGCTGGTGAATAGTAGT > CP009273/2139913‑2140046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |