| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2230114 | NA (NA) | 5 (0.010) +CTACAATAAGCTC |
4/86 | NT | NA | noncoding (102/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2230185 | NA (NA) | intergenic (+206/+37) | preA/mglC | dihydropyrimidine dehydrogenase, NADH‑dependent, subunit C/methyl‑galactoside transporter subunit | |||||
Only 100 of 693 total aligned reads displayed.
AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGA > CP009273/2230047‑2230181 | aaaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCa > 1:23896019/1‑68 (MQ=255) aaaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCa > 1:18344797/1‑68 (MQ=255) aaaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCa > 1:19703365/1‑68 (MQ=255) aaaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCa > 1:26353382/1‑68 (MQ=255) aacgcacataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGCAt > 1:27374027‑M1/58‑68 (MQ=255) aaCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAt < 1:18920808/68‑1 (MQ=255) aCCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCAtt > 1:24828227/1‑68 (MQ=255) acataacatcatgatctgtgtggttttgtaggccggataaggcgttcacgccGCATCCGGCATTTgg > 1:22108725‑M1/53‑67 (MQ=255) aCAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGc > 1:7270022/1‑67 (MQ=255) aaaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCt > 1:12234837/1‑66 (MQ=255) aaTCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCt > 1:36357663/1‑65 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:31392185/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:35222179/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:19424711/1‑68 (MQ=255) tCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGt > 1:16637063/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTg < 1:4808492/65‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGc < 1:14795442/66‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGc < 1:34581144/66‑1 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:23063602/1‑68 (MQ=255) aTGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCg > 1:6013291/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:30292322/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa < 1:10156973/68‑1 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:27837732/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:13381486/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:10530120/1‑68 (MQ=255) gTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGa > 1:15414628/1‑68 (MQ=255) ttGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:19338239/1‑68 (MQ=255) ttGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGAt > 1:10355319/1‑68 (MQ=255) gAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgc > 1:23375132/1‑68 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:31065613/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:2987932/1‑67 (MQ=255) gCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcg > 1:26630747/1‑67 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:17275667/1‑68 (MQ=255) ttATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATgcggcg > 1:12816591/1‑68 (MQ=255) tATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGt < 1:33446821/68‑1 (MQ=255) gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:6420252/1‑68 (MQ=255) gTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAAc > 1:34027981/1‑68 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:33824429/67‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:32350543/67‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACg < 1:31642680/67‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:35108092/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:5545631/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGc < 1:13526889/68‑1 (MQ=255) aGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGCGAACg < 1:7847691/67‑1 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGCACGCCt > 1:20547027/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:36627938/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:2585412/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:11966390/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:38763737/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:28184287/1‑68 (MQ=255) gCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCt > 1:15583167/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCGTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:22276645/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:17100764/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:8771468/1‑68 (MQ=255) ccGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCtt > 1:4176264/1‑68 (MQ=255) aaaaCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCg > 1:15906142/1‑67 (MQ=255) aaaCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGc < 1:11449525/68‑1 (MQ=255) aaCGCGCCAGCGTTGCATCCCCCctacaataagctcaacatactgatttgtatggttttgtaggccgg < 1:33014945‑M1/68‑46 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:7618413/68‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:1691588/68‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:5282392/68‑1 (MQ=255) aCGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 1:37454771/1‑68 (MQ=255) cgcgCCAGCGTTGCGTCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGGGAACGCCTTATCCGGCCt > 1:26894888/1‑67 (MQ=255) gcgttcacgccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGCACGCCTTATCCGGCCTAc < 1:3982662‑M1/57‑1 (MQ=255) cgttcacgccGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa < 1:17836841‑M1/58‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:38001671/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:37198025/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:25187138/67‑1 (MQ=255) cAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:3484242/67‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:35394936/66‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:21701119/66‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:18514392/66‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAcc < 1:6284338/66‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:37023352/68‑1 (MQ=255) gTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcac < 1:14302998/68‑1 (MQ=255) tGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcacac < 1:29120710/68‑1 (MQ=255) GCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACcacaca > 1:30506465‑M1/1‑68 (MQ=255) CATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAg < 1:25685911‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa < 1:9251068‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:16168433‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa < 1:20113814‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:20907372‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:21149516‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa < 1:21348869‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:13077531‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:38972194‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa < 1:2280531‑M1/68‑1 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:24342446‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:26148199‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:28664978‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:29514276‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:32120722‑M1/1‑68 (MQ=255) ATCCGGCATTTGGCTCCTGTTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGa > 1:35918026‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:10000470‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:30802832‑M1/1‑68 (MQ=255) TCCGGCATTTGGCTCCTGTTGCCGGAAGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGAt > 1:8338146‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:38317071‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:4552599‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:23633868‑M1/1‑68 (MQ=255) CCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATc > 1:10929825‑M1/1‑68 (MQ=255) | AAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCATCCGGCATTTGGCTCCTGTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCACACAGATCATGA > CP009273/2230047‑2230181 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |