| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 339 (0.710) | 13 (0.030) | 6/94 | NT | 5.2% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 186 (0.470) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 495 total aligned reads displayed.
CTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA > CP009273/2640570‑2640701 | ggcgaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg < 1:34287740‑M1/4‑1 (MQ=255)ggcgaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcg < 1:29524819‑M1/4‑1 (MQ=255)cTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCG > 1:14210103‑M1/1‑68 (MQ=255) gaccggcgcggctgaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaaCGCGGc > 1:38828710‑M1/62‑67 (MQ=255) cATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCT < 1:3208283‑M1/68‑1 (MQ=255) aTGCAGCGTTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG < 1:2879986‑M1/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG < 1:33077933‑M1/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG < 1:21278664‑M1/68‑1 (MQ=255) aTGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG < 1:17218737‑M1/68‑1 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG > 1:8297659‑M1/1‑67 (MQ=255) tGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTG > 1:28159880‑M1/1‑67 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc < 1:13710630/68‑1 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:4792705/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGcc > 1:39100247/1‑68 (MQ=255) gCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGc > 1:9763171/1‑67 (MQ=255) ggTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAACGGCGCGGCTGCCAAc < 1:24456420/66‑1 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:36543840/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:11094892/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:7639109/1‑67 (MQ=255) agagGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTa > 1:37599314/1‑67 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:20422393/1‑68 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:3947434/1‑68 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:22988622/1‑68 (MQ=255) agGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATcc > 1:22583016/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:26798607/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:17632932/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:33735449/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:7936725/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcag > 1:3132047/1‑67 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcag > 1:30512556/1‑67 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTAGCcagc > 1:9234093/1‑68 (MQ=255) ccAGAGTTTATCTGCTCCCCACGCTGCAACAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCcagc > 1:27581614/1‑68 (MQ=255) agTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:4188070/1‑68 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:4375491/1‑67 (MQ=255) gTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGcc > 1:19694802/1‑67 (MQ=255) ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc < 1:35440574/67‑1 (MQ=255) ttATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCcgc < 1:29618217/67‑1 (MQ=255) tCTGCTCCCCACGCTGTAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:21873283/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCtggtggatgacgttgggagccgcgggc > 1:32040696‑M1/1‑41 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:37435738/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:3901562/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:16290038/1‑68 (MQ=255) tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:21498701/1‑68 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:26489234/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:15692905/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:29754825/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:28998267/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:11626844/68‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCCGCAGCCGCGTTggg > 1:2513208/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:13103631/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:25316079/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGGTATCAAGCCGCCGCGTTTgg > 1:2558768/1‑68 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:8884023/68‑1 (MQ=255) gCTCCCCACCCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:28598704/68‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:38415639/1‑68 (MQ=255) cccACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAAc > 1:23804684/1‑68 (MQ=255) ccACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACa > 1:12885250/1‑68 (MQ=255) aCGCTGCAAGAAAAAGGGGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:16920859/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:23593660/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:22833517/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:7466232/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGAAGCCGCGTTTGGTTAACaa > 1:7023094/1‑67 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACACGc > 1:7286128/1‑68 (MQ=255) gCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCg > 1:35168234/1‑68 (MQ=255) cTGCAAGAAAACGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:26955182/1‑68 (MQ=255) tGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAg < 1:16780711/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:1917399/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:30113779/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:2732313/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:551819/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:2205392/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGGTATACAGCAGCCGCGTGTGGTTAACAAGCGAGGCa < 1:19016143/68‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt > 1:10875206/1‑68 (MQ=255) aaaaaGGAGCAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:12427560/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:2782613/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:3790189/66‑1 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:31650458/66‑1 (MQ=255) aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc > 1:34048187/1‑57 (MQ=255) aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTAc > 1:33450919/1‑68 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:33246596/1‑67 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACTGt < 1:17896498/68‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:616365/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:32430665/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:30777948/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:34836896/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:27180627/66‑1 (MQ=255) agaAAGGCCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:6493298/1‑65 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:10246244‑M1/61‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:14646891‑M1/61‑1 (MQ=255) aGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa > 1:18490604/1‑68 (MQ=255) gggCGCGGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggct > 1:25876438‑M1/1‑11 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:5087524/1‑68 (MQ=255) gagcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:18838219/3‑68 (MQ=255) ggCGCGGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctg < 1:37341067‑M1/68‑59 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:32478856/1‑67 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgga > 1:39269924‑M1/1‑8 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:31782077‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:15153155‑M1/67‑60 (MQ=255) cgcgGCTGaagatctgctgattgtcagaccgtaaatgcctcgcttgttaaccaaacgcggctgctgg < 1:36146879‑M1/67‑60 (MQ=255) cgcgGCTGCCAACGTTACCCAGCcgccgcgccctttctcctttttcttgcagcgtggggagcagataa > 1:38082263‑M2/1‑23 (MQ=255) | CTTCATGCAGCGGTAGAGGCCAGAGTTTATCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCA > CP009273/2640570‑2640701 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |