| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2640634 = | 339 (0.710) | 13 (0.030) | 6/94 | NT | 5.2% | coding (51/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain |
| ? | CP009273 | 2640664 = | 186 (0.470) | coding (21/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain | |||||
Only 100 of 379 total aligned reads displayed.
TCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640599‑2640729 | tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:21498701/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:34385314/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:25326164/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:16290038/1‑68 (MQ=255)tCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGttt > 1:28787116/1‑68 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:2806878/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:23658008/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:15692905/68‑1 (MQ=255) cTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTg < 1:11626844/68‑1 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:33806148/1‑68 (MQ=255) tGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTgg > 1:1777530/1‑68 (MQ=255) gCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGt < 1:26950640/68‑1 (MQ=255) cagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGt < 1:31726860‑M2/6‑1 (MQ=255) cagaccgtaaatgcctcgcttgttaaccaaacgcggctgctggataacgttggcagccgcgTTTGGt < 1:14646891‑M2/6‑1 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:22762754/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa > 1:33258184/1‑68 (MQ=255) tCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTa < 1:38323179/68‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:7466232/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:21800094/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACaa > 1:26313537/1‑67 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAg < 1:26008954/68‑1 (MQ=255) aCGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAg < 1:38908548/68‑1 (MQ=255) cGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGc > 1:7236497/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:30438931/1‑68 (MQ=255) cTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGa > 1:39059079/1‑68 (MQ=255) tGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAg < 1:16780711/68‑1 (MQ=255) gCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAgg < 1:16044653/68‑1 (MQ=255) cctcgcttgttaaccaaaCGCGGCTGCCAACGTTATCCAGCCGCCGGGTTTGGGTAACAagcgggg < 1:29554960‑M1/48‑4 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGc < 1:32061430/67‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:18920329/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:2767657/68‑1 (MQ=255) aaGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCa < 1:2728914/68‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt < 1:2712972/68‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAt < 1:4164232/68‑1 (MQ=255) aGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTGAACAAGCGAGGCAt > 1:27822671/1‑68 (MQ=255) aaaaaGGAGCAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:12427560/1‑68 (MQ=255) aaaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAttt > 1:17162001/1‑68 (MQ=255) aaaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCAtt < 1:15225542/66‑1 (MQ=255) aaaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGGTAACAAGCGAGGCATTTAc > 1:29165103/1‑68 (MQ=255) aaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACg < 1:25126103/68‑1 (MQ=255) aaGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACg < 1:4367948/68‑1 (MQ=255) ggAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:8820349/1‑67 (MQ=255) gagaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:22949324/1‑66 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:37524576/1‑65 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:30777948/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:34090076/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:7632080/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:39393438/66‑1 (MQ=255) agaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGt < 1:25234112/66‑1 (MQ=255) agaAAGGCCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACgg > 1:6493298/1‑65 (MQ=255) gaAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCt < 1:2196595/67‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTTTCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTTCGGTCTg < 1:13901952‑M1/61‑1 (MQ=255) accaaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTg < 1:10246244‑M1/61‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:30091756/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:1837768/68‑1 (MQ=255) aaGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc < 1:31515708/68‑1 (MQ=255) caaaCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa < 1:24569790‑M1/64‑1 (MQ=255) aGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACa > 1:6170713/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACaa > 1:37980372/1‑68 (MQ=255) gggCGCGGCTGCCAACGTTATCCAGCAGCAGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGAc > 1:32574130/1‑66 (MQ=255) ggCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCGGACaa > 1:38566773/1‑67 (MQ=255) gcgcGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAAt < 1:19415030/67‑1 (MQ=255) GCGGCTGCCCACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGCGGCATTTACGGTCTGACAATca < 1:14250946‑M1/67‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:11185625‑M1/67‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:210906‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:12606305‑M1/67‑1 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:32863712‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:29687788‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca > 1:22425599‑M1/1‑67 (MQ=255) GCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATca < 1:23873099‑M1/67‑1 (MQ=255) GGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATcagca > 1:18688516‑M1/1‑68 (MQ=255) TGCCACCGTTATCCAGCAGCCGCGGTTGGTTAACAAGCGAGGCATTTACGGGCTGACAATCAGCAGAt > 1:10327733‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:5392945‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:10006082‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:9132977‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:34918458‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:4852821‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:5940635‑M1/1‑68 (MQ=255) TGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGAt > 1:17895121‑M1/1‑68 (MQ=255) cAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCt < 1:36181178/67‑1 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca < 1:23302250‑M2/68‑3 (MQ=255) aCGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTca < 1:25749965‑M2/68‑3 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:6610224‑M2/67‑4 (MQ=255) gTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcag < 1:9730519‑M2/67‑4 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagcc < 1:37426697‑M2/68‑6 (MQ=255) ttATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagcc < 1:35788393‑M2/68‑6 (MQ=255) aTCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgc > 1:19099181‑M2/1‑61 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:35243892‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:3352231‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:32285230‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:31257658‑M2/67‑9 (MQ=255) ccAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcg < 1:28905026‑M2/67‑9 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgcc < 1:37341067‑M2/68‑11 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgcc < 1:28480004‑M2/68‑11 (MQ=255) cagcagCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTcagccgcgcc < 1:8197890‑M2/68‑11 (MQ=255) agcagcCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCg > 1:33177664/1‑68 (MQ=255) gcagccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCTGCAGATCTTCAGCCGCGCCgg > 1:26570615‑M2/10‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:16902561‑M2/8‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:13263213‑M2/8‑68 (MQ=255) agccgcgTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTc > 1:13082109‑M2/8‑68 (MQ=255) | TCTGCTCCCCACGCTGCAAGAAAAAGGAGAAAGGGCGCGGCTGCCAACGTTATCCAGCAGCCGCGTTTGGTTAACAAGCGAGGCATTTACGGTCTGACAATCAGCAGATCTTCAGCCGCGCCGGTCGCCCG > CP009273/2640599‑2640729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |