New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2655857 =NA (NA)6 (0.010) 5/98 NT 100% noncoding (190/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
?CP009273 2655873 = 0 (0.000)noncoding (206/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

Only 100 of 112 total aligned reads displayed.

TACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACG  >  CP009273/2655790‑2655868
                                                                   |           
tACGGTTCTGTTCACTGTACGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg             <  1:17410715/68‑1 (MQ=255)
  cGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg           <  1:15251489/68‑1 (MQ=37)
   gtttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg          <  1:7245809/66‑1 (MQ=25)
   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg          <  1:13623717/68‑1 (MQ=35)
   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg           >  1:21726687/1‑67 (MQ=35)
   ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg           >  1:7152745/1‑67 (MQ=35)
    gTTCTGTTCACTGTAGGCCTTATAAGACGCATTACGCGTCGCATAAGGCAAAGGCTTTCTGATgcggc         >  1:15283222/1‑68 (MQ=11)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:28525436/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:27781771/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:25980370/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:24421146/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:23125060/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:36928660/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:23095805/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:2299817/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:33465835/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:31799658/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:30253139/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:860499/1‑68 (MQ=35)
    gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:15268723/1‑68 (MQ=35)
    gTTCTGTTCACTGAAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc         >  1:35173534/1‑68 (MQ=25)
     ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg        >  1:39564991/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg        <  1:29815910/67‑1 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg        <  1:147349/67‑1 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:24217622/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:10697689/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:27654178/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:26185530/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       <  1:11462520/68‑1 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:33468188/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:8673409/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:14096239/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:35731404/1‑68 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       <  1:36146026/68‑1 (MQ=35)
      tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt       >  1:1616675/1‑68 (MQ=35)
       cTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTg      <  1:1087644/68‑1 (MQ=35)
       cTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTg      <  1:1134772/68‑1 (MQ=35)
        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGa     >  1:31775944/1‑68 (MQ=35)
        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGa     >  1:34449023/1‑68 (MQ=35)
        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGa     >  1:15882638/1‑68 (MQ=35)
        tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGa     >  1:27457626/1‑68 (MQ=35)
           tCATTGTAGGCCTGATAAGAGGCATTTCGCGTCGCTTCAGGCAACGTCTGTCGGATGCGGCATGAACg  <  1:36661912/68‑1 (MQ=11)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCTCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:10944072/68‑1 (MQ=14)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGatc   >  1:26452244/1‑65 (MQ=14)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:8129133/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:780510/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:30256823/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:9469665/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:6172926/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:5010619/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:403637/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:3544236/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:39029039/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:8065020/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:28703508/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:36217251/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:10707106/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:29084516/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:21041891/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:20357933/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:16863163/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:19833698/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:24566593/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:18279937/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:18443797/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:24440788/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:22003034/1‑67 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:20398416/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:9559869/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:4380983/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:5797828/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:19740398/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:648997/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:6525924/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:6898624/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:17901907/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:17107815/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:839805/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:12324781/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:29922731/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:24562224/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:29291429/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:30343578/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:28932245/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:31955657/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:33279533/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:10030545/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:25705863/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:34606070/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:3930063/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:22461974/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:35857058/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:22030789/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:21801881/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:21302556/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:3796730/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:38606212/68‑1 (MQ=31)
           tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTCAACg  <  1:12240008/68‑1 (MQ=14)
           tCACTGTAGGCCTCATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc   >  1:36276019/1‑67 (MQ=14)
           tCACTGTAGGCATTATAAGACGCATTACGAGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg  <  1:4334899/68‑1 (MQ=11)
                                                                   |           
TACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACG  >  CP009273/2655790‑2655868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.