| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2655857 = | NA (NA) | 6 (0.010) | 5/98 | NT | 100% | noncoding (190/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | 2655873 = | 0 (0.000) | noncoding (206/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
TAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCT > CP009273/2655807‑2655940 | cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca > 1:711912‑M2/67‑67 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca > 1:711911‑M2/67‑67 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca > 1:30108015‑M2/67‑67 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca < 1:3098076‑M2/1‑1 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca < 1:23764111‑M2/1‑1 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca > 1:15858785‑M2/67‑67 (MQ=255)cgcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgca > 1:36087956‑M2/67‑67 (MQ=255) gcgtaatgcgtcttatctggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:29554228‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaccacaaccgtagggcggataaggcgttcacgccgcATc < 1:1628355‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:21780971‑M2/66‑67 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:29434986‑M2/66‑67 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:2006700‑M2/66‑67 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:6437894‑M2/66‑67 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:6480815‑M2/66‑67 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:23220495‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:23247201‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:21910645‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:29118937‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:33693099‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:3052487‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:27839489‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:33787811‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:36179772‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:36260197‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:4385472‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:765115‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:12235439‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:19592033‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:1783771‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:13102669‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:1332572‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:17458271‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:17200924‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:16211010‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:16399793‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATc < 1:16922647‑M2/3‑1 (MQ=255) gcgtaatgcgtcttatcaggcctacagtgaacagaaccgtagctcggataaggcgttcacgccgcATc < 1:17369064‑M2/3‑1 (MQ=255) gcgtaatgcgtctgatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcAt > 1:4424068‑M2/66‑67 (MQ=255) cgtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATcc > 1:37123637‑M2/65‑68 (MQ=255) gtactgcgtcttatcaggcctacagtgaaccgacccggaggtcggataaggcgttcacgccgcATCCg < 1:22084973‑M2/5‑1 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg > 1:23650713‑M2/64‑68 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg < 1:6001863‑M2/5‑1 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg < 1:62145‑M2/5‑1 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg < 1:35862440‑M2/5‑1 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg > 1:12203366‑M2/64‑68 (MQ=255) gtaatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCg > 1:36716737‑M2/64‑68 (MQ=255) aatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCGAc > 1:4412883‑M2/62‑68 (MQ=255) aatgcgtcttatcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCGAc > 1:12424491‑M2/62‑68 (MQ=255) atcaggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATcc > 1:36461476‑M2/52‑55 (MQ=255) caggcctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCGACCTACGGTTCTGt < 1:16945151‑M2/19‑1 (MQ=255) ctactgtcaacagacccgtaggtcggatacggcgtccacgccgcATCCGACCTACGGTTCTGTTCACt < 1:16388661‑M2/24‑1 (MQ=255) ctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcATCCGACCTACGGTTCTGTTCACt < 1:30471935‑M2/24‑1 (MQ=255) gaaccgaaccgtaggtcgcaaacggcgttcacgccgcATCCGACCTACGGTTCTGTTCACTGTAgg < 1:2712666‑M2/29‑1 (MQ=255) gaacagaaccgtaggtctgataaggcgttcacgccgcATCCGACCTACGGTTCTGTTCACTGTAGGc < 1:7614547‑M2/30‑1 (MQ=255) accgtaggtcggataaggcgttcacgccgcATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAg > 1:35788628‑M2/31‑68 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:11983059‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:21111627‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:126281‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:17703838‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:38681361‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:38653498‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:11926930‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:15990126‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:30001609‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:17117751‑M2/68‑1 (MQ=255) ATCCGACCTACGGTTCTATTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCt < 1:37565588‑M2/68‑1 (MQ=255) | TAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCT > CP009273/2655807‑2655940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |