| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2955828 | 443 (0.930) | 14 (0.040) | 11/94 | NT | 5.1% | coding (296/324 nt) | ppdC | putative prepilin peptidase‑dependent protein |
| ? | CP009273 | = 2955884 | 151 (0.380) | coding (240/324 nt) | ppdC | putative prepilin peptidase‑dependent protein | |||||
Only 100 of 680 total aligned reads displayed.
ACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGC > CP009273/2955761‑2955893 | aCGATTGGAATGGTAGCCCCTTAACATAGCGGCTCCTGACTACTGCCGATTCGGGCAATGCAGGCGGG > 1:22595337‑M1/1‑68 (MQ=255)aCGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGG > 1:6496937‑M1/1‑68 (MQ=255) cGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGG < 1:29069452‑M1/67‑1 (MQ=255) cGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGG > 1:9710026‑M1/1‑67 (MQ=255) ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCa < 1:11549692/67‑1 (MQ=255) ttGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCa < 1:27521870/67‑1 (MQ=255) aaTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAtctc > 1:34008963/1‑67 (MQ=255) aaTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAtctc > 1:28415941/1‑67 (MQ=255) aaTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCAtctc < 1:37897187/67‑1 (MQ=255) aTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCg < 1:32800053/67‑1 (MQ=255) aTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCg > 1:14135248/1‑67 (MQ=255) aTGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCg < 1:36906667/67‑1 (MQ=255) tGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCg > 1:32979814/1‑66 (MQ=255) aGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtc > 1:4268765/1‑67 (MQ=255) aGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtc > 1:31726197/1‑67 (MQ=255) aGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtc > 1:10003700/1‑67 (MQ=255) aGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtc > 1:32444948/1‑67 (MQ=255) aGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTtc < 1:21722822/67‑1 (MQ=255) ccTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTg > 1:14369603/1‑67 (MQ=255) ccTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTg > 1:28763852/1‑67 (MQ=255) aCATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg > 1:17079811/1‑68 (MQ=255) aCATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg > 1:33624521/1‑68 (MQ=255) aCATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg > 1:34498267/1‑68 (MQ=255) aCATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCg > 1:7305565/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCGGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:13010740/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:10237389/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:3974315/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:4535156/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:27889363/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:8611580/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:11229285/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:2622888/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:25843290/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:10806370/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:20178382/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCgg > 1:12332059/1‑68 (MQ=255) cATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCCGCCCCCgg > 1:3053230/1‑68 (MQ=255) gCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGa > 1:30893492/1‑68 (MQ=255) gCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGa > 1:20547260/1‑68 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGTGTCATCTCGCCTTCTCTGCCCCCGGGTGaa < 1:16825216/67‑1 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa < 1:15503681/68‑1 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaaa < 1:39104290/68‑1 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaa < 1:5856931/67‑1 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaa > 1:24905348/1‑67 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaa > 1:18577250/1‑67 (MQ=255) ggCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGaa > 1:29751133/1‑67 (MQ=255) cTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGc < 1:15108294/68‑1 (MQ=255) cTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGc < 1:23271676/68‑1 (MQ=255) cTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGc < 1:37142958/68‑1 (MQ=255) cTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGc < 1:1176197/68‑1 (MQ=255) actactGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTTAAACTAGCGTa > 1:38537652/1‑68 (MQ=255) ctactGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTa < 1:2993478/67‑1 (MQ=255) actGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAAc > 1:38850417/1‑67 (MQ=255) actGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAAc > 1:4991766/1‑67 (MQ=255) actGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAAc > 1:17848881/1‑67 (MQ=255) actGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACg < 1:16195708/68‑1 (MQ=255) gACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTg > 1:24332682/1‑68 (MQ=255) cGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaa > 1:18985012‑M1/1‑22 (MQ=255) cGATTCGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctaggttcacccgggggcagcgaa > 1:19449638‑M1/1‑22 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCATCTCTGCTTCTCTGCCCCCGGGGGAAACTAGCGTAACGCTGa < 1:35092035/67‑1 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGa < 1:26545712/67‑1 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGa < 1:31440925/67‑1 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGa < 1:21090233/67‑1 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGAt > 1:23887007/1‑68 (MQ=255) cGATTCGGGCAATGCAGGCGGGTCAGCTAGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGAt > 1:8039379/1‑68 (MQ=255) gATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg < 1:9116493/68‑1 (MQ=255) gATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg < 1:23620032/68‑1 (MQ=255) gATTCGGGCAATGCAGGCGGGGCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATg < 1:36322039/68‑1 (MQ=255) cgtgCAATGCAGGCGGGTCATCTCGCCTTCTGTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGa < 1:27111513/65‑1 (MQ=255) cGGGCAATGCAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcga < 1:35774915‑M1/68‑52 (MQ=255) gCAATGCAGGCGGGTCATCTCGCCCTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGaca < 1:6817998/67‑1 (MQ=255) aTGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATc > 1:28174997‑M2/1‑67 (MQ=255) aTGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATc > 1:37612508‑M2/1‑67 (MQ=255) gCAGGCGGGatgtgtcagcatcagcgttactctagtttcacccgggggcagagaaggcgagatgaccc < 1:8151623‑M1/68‑60 (MQ=255) cAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgaccc > 1:10515591‑M1/1‑8 (MQ=255) cAGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgaccc > 1:29650036‑M1/1‑8 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacctgggggcagagaaggcgagatgacccg < 1:37800991‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:2929064‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:12737594‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:25448104‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:30687394‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:18342435‑M1/67‑61 (MQ=255) aGGCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg < 1:17504143‑M1/67‑61 (MQ=255) aGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccg > 1:22951362‑M2/1‑63 (MQ=255) aGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccg > 1:4771685‑M2/1‑63 (MQ=255) ggCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgccccg > 1:14709019‑M1/1‑6 (MQ=255) ggCGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccg > 1:5460126‑M1/1‑6 (MQ=255) cGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccgcct > 1:22163195‑M1/1‑4 (MQ=255) cGGGatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccgcct > 1:7769185‑M1/1‑4 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:34795919‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:19743947‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:21271057‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:7563048‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:15924711‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:35407850‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:35917613‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:24505023‑M2/67‑8 (MQ=255) cGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcct < 1:39271829‑M2/67‑8 (MQ=255) gggatgtgtcagcatcagcgttacgctagtttcacccgggggcagagaaggcgagatgacccgcctgc < 1:35215786‑M1/68‑66 (MQ=255) gggTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATcccgcctg > 1:8944902‑M2/1‑59 (MQ=255) | ACGATTGGAATGGTAGACCCTTAACATAGCGGCTCCTGACTACTGACGATTCGGGCAATGCAGGCGGGTCATCTCGCCTTCTCTGCCCCCGGGTGAAACTAGCGTAACGCTGATGCTGACACATCCCGCCTGC > CP009273/2955761‑2955893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |