| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3701786 | 107 (0.230) | 19 (0.050) | 11/88 | NT | 18.4% | intergenic (‑721/+190) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | = 3701789 | NA (NA) | intergenic (‑724/+187) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 843 total aligned reads displayed.
GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCG > CP009273/3701718‑3701853 | gtcgagtcgaACCTCCCTG‑CCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:12019549‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:34779910‑M1/68‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:34114046‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:2830317‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:24240196‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:19766696‑M1/67‑1 (MQ=255) ccccGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCaacgagcaggcggttttg > 1:3270964‑M1/1‑49 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:9495706‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:3084959‑M2/1‑68 (MQ=255) GAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:23158432‑M2/1‑68 (MQ=255) agcTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:6776665‑M2/4‑67 (MQ=255) aGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCaacgagcaggcttttttgcatctgc > 1:29415390‑M1/1‑43 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:12422945‑M2/1‑67 (MQ=255) AGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:21258369‑M2/1‑67 (MQ=255) AGGTTCTCATCCTCATGAGCTACAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTgg > 1:14005229‑M2/1‑67 (MQ=255) GGTTCTCATGCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:27314265‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGt < 1:10010062‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGt < 1:21751056‑M2/67‑1 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:36821674‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:30605107‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:6374952‑M2/1‑68 (MQ=255) GGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTc > 1:1689864‑M2/1‑68 (MQ=255) GGTTCTCATCCGCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGCGCAGGCTTTTCGAATTTGGTc > 1:27738963‑M2/1‑68 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:7120585‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:11167287‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:13673657‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:31270698‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:10833055‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:7929972‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:29096331‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:33023724‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:11491706‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:3340186‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:26200046‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:3514404‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:25357753‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:23691946‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:6208254‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:54773‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:4817899‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:36207538‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:38815670‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:38456814‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:22334583‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:38200704‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:15469160‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:15703398‑M2/68‑1 (MQ=255) TCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGt < 1:15994102‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:1510481‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:2036636‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:21641131‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:10284601‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:2564901‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:25009534‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:35903098‑M2/68‑1 (MQ=255) CTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:11682150‑M2/68‑1 (MQ=255) CTCATCCTCATGAACTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTg < 1:27040606‑M2/68‑1 (MQ=255) cctctatcaccgaccaaattcgAAAAGCCTGCTCGGTGGGGAGGGTTTTCGAATTTGGTCGGTGTTag < 1:13380969‑M1/46‑1 (MQ=255) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:29868224/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:14561709/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:29644216/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc < 1:5769704/67‑1 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:18536783/1‑67 (MQ=33) gCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTAc > 1:39608570/1‑67 (MQ=33) cgaccaaattcgAAAAGCCTGCTCGTTGAGCAGGGTTTTCGAATTTGGTCGGTGATAGAGGATTACTc < 1:1719574‑M1/56‑1 (MQ=255) tGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTc > 1:37708110/1‑67 (MQ=37) tGCAAAAAAGCCTGCTCaacgagcaggcttttttggatctgcagctcatgaggatgagaacctccggg > 1:17648660‑M1/1‑17 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCg > 1:8563729/1‑68 (MQ=255) cAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCg > 1:28116684/1‑68 (MQ=255) aaaaaGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:6570014/68‑1 (MQ=255) AAAAGCCTGCTGGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:36563056‑M1/67‑1 (MQ=255) aaaGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagg > 1:20898055‑M1/1‑11 (MQ=255) AAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTg < 1:7458996‑M1/66‑1 (MQ=255) AAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc < 1:17943593‑M1/67‑1 (MQ=255) AAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGc < 1:16564486‑M1/67‑1 (MQ=255) aGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcaggga > 1:24638124‑M1/1‑9 (MQ=255) aGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcaggga > 1:8210364‑M1/1‑9 (MQ=255) aGCCTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcaggga > 1:19468717‑M1/1‑9 (MQ=255) gCCTGCTCGTGGAGCAGGCTTTTCGATTTTGGTCGGTGATTGAGGATTACTCGCCACATCGTGGCTc > 1:5997620/1‑67 (MQ=18) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:35407317‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:26543699‑M1/67‑1 (MQ=255) GCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTc < 1:37333982‑M1/67‑1 (MQ=255) ccTGCTCaacgagcaggcttttttgcatctgcagctcattaggatgagaacctccgggggcagggagg > 1:33854207‑M1/1‑7 (MQ=255) ccTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg > 1:25844683‑M1/1‑7 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggt < 1:35636131‑M1/68‑63 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:9072265‑M1/67‑62 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:34561736‑M1/67‑62 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:18835272‑M1/67‑62 (MQ=255) cTGCTCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggagg < 1:10593421‑M1/67‑62 (MQ=255) cTGCGCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggt < 1:12926464‑M1/68‑63 (MQ=255) GCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt > 1:50703‑M1/1‑68 (MQ=255) GCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCt > 1:28782179‑M1/1‑68 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg < 1:4443896‑M1/67‑66 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:39251718‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:37141519‑M1/1‑2 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg < 1:22576456‑M1/67‑66 (MQ=255) tCaacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgagggcagggaggttcg > 1:22896498‑M1/1‑2 (MQ=255) caacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcgac < 1:31688320‑M1/68‑68 (MQ=255) caacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagggaggttcg > 1:12776500‑M1/1‑1 (MQ=255) CGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCg < 1:32268115‑M1/68‑1 (MQ=255) | GTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTCGTTGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCG > CP009273/3701718‑3701853 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |