New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 64557326 (0.690)20 (0.050) 8/94 NT 6.1% coding (1224/2352 nt) polB DNA polymerase II
?CP009273 = 64577 338 (0.850)coding (1204/2352 nt) polB DNA polymerase II

Only 100 of 530 total aligned reads displayed.

ACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64511‑64644
                                                                  |                                                                   
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     <  1:11924968/67‑1 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAgcc                                                                     <  1:13604021/67‑1 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:19546279‑M2/1‑67 (MQ=255)
aCAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCg                                                                    >  1:14724977‑M2/1‑67 (MQ=255)
    gCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccag                                                                <  1:38367481‑M2/68‑6 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGCATCCATCACGTAGCCgccagg                                                               <  1:36657826‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:10370114‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:23904858‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               <  1:27564446‑M2/68‑7 (MQ=255)
     cTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgc                                                                   >  1:6581422‑M2/1‑62 (MQ=255)
      ttttATCGTCGAGCACCAGCACTGAATCATAAAGCGCTTGCCGTTAATACATCACTTAGCCGCCAgg                                                               <  1:11152693/67‑1 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccaggg                                                              >  1:21715490‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:33684782‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:17639876‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:19966109‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:202362‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:16207908‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:11742365‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:53692‑M2/1‑61 (MQ=255)
      ttttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:13741842‑M2/1‑61 (MQ=255)
      ttttATAGGCCAGCACCAGCACTGACTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagg                                                               >  1:36948377‑M2/1‑61 (MQ=255)
       tttATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggc                                                             >  1:15567659‑M2/1‑60 (MQ=255)
          ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCCCGTAGCCGCCAGGGCTg                                                           >  1:14151623/1‑67 (MQ=255)
          ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTgg                                                          <  1:15738293/68‑1 (MQ=255)
          ataGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTg                                                           >  1:6836362/1‑67 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCgccagggctttat                                                        >  1:38553777‑M2/1‑55 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:34325910/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:2050455/1‑68 (MQ=255)
            aGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:20901182/1‑68 (MQ=255)
            aGTCCAGCACCAGCAATGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCg                                                        >  1:31552540/1‑68 (MQ=255)
              tacagcaccagcacTGAATCATAAAGCCCTGGCCCTGAATCCATCACGTAGCCGCCAGGGCTGGCGt                                                       >  1:19316513/3‑67 (MQ=255)
              tCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGt                                                       >  1:33352416/1‑67 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:31212596/1‑68 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:29741332/1‑68 (MQ=255)
               ccagcaccagcaCTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgc                                                     >  1:37283938/1‑68 (MQ=255)
                cagcaccagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcg                                                    <  1:35338448/68‑1 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:2609430/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:26838280/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:29476135/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:34723662/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:39513640/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:23376516/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:1852029/1‑67 (MQ=255)
                    accagcacTGAATCATAAAGCCCTGGCCGTGAATCAATAACGTAGCCGCCAGGGCTGGCGTgcggcg                                                 >  1:16883477/1‑67 (MQ=255)
                         cacTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACt                                            >  1:12039730/1‑67 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:23123431/1‑68 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          <  1:9765055/68‑1 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:7340256/1‑68 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:30696934/1‑68 (MQ=255)
                          acTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTc                                          >  1:25443680/1‑68 (MQ=255)
                          acTGAATCATAAACCCCAGGCCGTGAATCCATCACGAAGCCGCCAGGGCTGGCTTGCGGCGGCACTTc                                          <  1:14998506/68‑1 (MQ=255)
                               aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:32182266/1‑68 (MQ=255)
                               aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:32031172/1‑68 (MQ=255)
                               aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:4836199/1‑68 (MQ=255)
                               aTCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCga                                     >  1:13258891/1‑68 (MQ=255)
                                 cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:38113788/68‑1 (MQ=255)
                                 cATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCgaga                                   <  1:19718551/68‑1 (MQ=255)
                                  aTACAGCCCTGGCCGTCAATCCATCACCTAGCCgccccggctttatgattcagtgctggtgctggact                                  >  1:10947139‑M2/1‑33 (MQ=255)
                                  aTAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGAt                                  >  1:32751619/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:17196869/1‑68 (MQ=255)
                                    aaaGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTa                                >  1:8896170/1‑68 (MQ=255)
                                      aGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAgg                              <  1:1876290/68‑1 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:14829018/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:4390098/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:16561935/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:24207076/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:10041330/1‑68 (MQ=255)
                                       gCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:18108024/1‑68 (MQ=255)
                                        cccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgc                             >  1:22811235/1‑67 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCTGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:1401666/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:17901052/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:8326006/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:24676519/1‑68 (MQ=255)
                                         ccTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:31083368/1‑68 (MQ=255)
                                         ccTCGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGgcgc                           >  1:9483689/1‑68 (MQ=255)
                                          cTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGcgcg                          <  1:38271286/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:28179317/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:34052238/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:27206946/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:771831/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:24924229/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:5735771/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:391952/68‑1 (MQ=255)
                                           tGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGa                         <  1:29125565/68‑1 (MQ=255)
                                              ccGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACAt                      >  1:1591674/1‑68 (MQ=255)
                                                gTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATaa                    <  1:35843400/68‑1 (MQ=255)
                                                  gAACCCACCACGTCCCCgccagggctttatgattcagtgctggtgctggactataaaagcctgtacc                   >  1:12900842‑M2/1‑17 (MQ=255)
                                                   aaTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:6110517/1‑68 (MQ=255)
                                                   aaTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:2996983/1‑68 (MQ=255)
                                                    aTCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCa                 >  1:2147475/1‑67 (MQ=255)
                                                     tCCATCACGTAGCCgccagggctttatgattcagtgctggtgctggactataaaagcctgtacccgtc               >  1:25218144‑M2/1‑14 (MQ=255)
                                                         tCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGa           >  1:27467936/1‑68 (MQ=255)
                                                           aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATATCCAGCGCGAt          >  1:12297284/1‑67 (MQ=255)
                                                           aCGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGAt          >  1:22339175/1‑67 (MQ=255)
                                                             gTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCa       >  1:35024239/1‑68 (MQ=255)
                                                             gTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCa       >  1:37779325/1‑68 (MQ=255)
                                                             gTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCa       <  1:28557625/68‑1 (MQ=255)
                                                               aGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCAtt     <  1:36221703/68‑1 (MQ=255)
                                                                gccgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCAtt     >  1:6417695/1‑67 (MQ=255)
                                                                  cgccAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTcgc  <  1:24531408/68‑1 (MQ=255)
                                                                  |                                                                   
ACAGGCTTTTATAGTCCAGCACCAGCACTGAATCATAAAGCCCTGGCCGTGAATCCATCACGTAGCCGCCAGGGCTGGCGTGCGGCGGCACTTCGCCGAGATTAGGCGCGACATAACCAGCGCGATGCATTCGC  >  CP009273/64511‑64644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.