New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 725679	NA (NA)	6 (0.010)	5/100	NT	NA	coding (641/4194 nt)	rhsC	Rhs family putative polymorphic toxin
	?	CP009273	= 725702	NA (NA)					coding (664/4194 nt)	rhsC	Rhs family putative polymorphic toxin

ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768        |                                                                   acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:10229717/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:31061281/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:35041869/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:36558561/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        <  1:2789160/68‑1 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        <  1:37914695/68‑1 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:38184290/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        <  1:19231025/68‑1 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:448112/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:18558169/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:5493420/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:6520661/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:7986747/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        <  1:13556920/68‑1 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:7883656/1‑68 (MQ=31) acaGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        >  1:10045660/1‑68 (MQ=31) acaGACGTACCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCg        <  1:24656351/68‑1 (MQ=14)  caGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       >  1:10957784/1‑68 (MQ=33)    gACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGc     >  1:15600896/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCCGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6368120/1‑68 (MQ=255)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCCCCGGCGTGACGGATGGTGCCGGGCg    >  1:25306744/1‑68 (MQ=25)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:36983510/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:26083265/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:27318945/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:37126343/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13940316/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:29848572/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:10822757/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:3049591/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:34996886/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:22474750/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:12373134/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:793482/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:4967990/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:13852334/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:15964057/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:6803469/1‑68 (MQ=35)     aCGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCAGGGCg    >  1:39212770/1‑68 (MQ=25)      cGTTCCTCCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCCCCGGCGTGACGGATGGTGCAGGGCg    >  1:24004481/1‑67 (MQ=11)      cGTTCCACCGCGAAGCCGCCGGTGATTTCGCCGCTGAATTCACCGGCGTGACGGATGGTGCCGGGCg    <  1:16913549/67‑1 (MQ=11)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:1908345/64‑1 (MQ=33)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCgg       <  1:30610403/64‑1 (MQ=33)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:8695277/67‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:11898963/67‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:30035587/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:12311391/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:30035582/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:282912/67‑1 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:23965974/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:15951697/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:17057016/1‑67 (MQ=35)      cGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    >  1:30637873/1‑67 (MQ=35)      cGTGCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCg    <  1:12991075/67‑1 (MQ=25)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:19148448/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:12613630/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:14685224/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:15118893/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:5063415/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:5053101/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:4863282/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:39434687/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:2035831/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:38450857/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:20704464/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:37639027/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:3705582/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:29160418/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:35318170/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:30521746/1‑68 (MQ=35)       gTTCCACCGCGAAGCCGCCGGTCAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:8062797/1‑68 (MQ=25)        ttCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTc  >  1:17113739/1‑67 (MQ=35)        |                                                                   ACAGACGTTCCACCGCGAAGCCGCCGGTGAATTCAGCGGCGAAATCACCGGCGTGACGGATGGTGCCGGGCGTC  >  CP009273/725695‑725768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.