New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 772557 =181 (0.380)7 (0.020) 5/98 NT 5.4% coding (760/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex
?CP009273 772577 = 89 (0.210)coding (780/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex

Only 100 of 154 total aligned reads displayed.

GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG  >  CP009273/772511‑772644
                                                                  |                                                                   
ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg                                                                    <  1:29246946/68‑1 (MQ=255)
 gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   >  1:21524517/1‑68 (MQ=255)
 gcagcaGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   >  1:14309831/1‑68 (MQ=255)
  cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   <  1:12136143/67‑1 (MQ=255)
  cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   <  1:34263113/67‑1 (MQ=255)
  cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   <  1:35099961/67‑1 (MQ=255)
  cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCACAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   <  1:26629486/67‑1 (MQ=255)
  cagcagAGAAAGCTGCAGCCGACAAAAAAGCACCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                                                   <  1:6881575/67‑1 (MQ=255)
   ttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAGGCAGCAGCTGATa                                                                 >  1:15357463‑M1/44‑68 (MQ=255)
     ttttggctgcggcggctttttctgccgctgctttcttatcagctgctgccttttcagcagcTGATAAg                                                               <  1:33423678‑M2/7‑1 (MQ=255)
      agagAACGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:22710488/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAATGGAGCAGAAAAAGCGGCTGCTGAATCGGCAGCAGCTGATAAGa                                                              >  1:9513433/1‑68 (MQ=37)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:9835539/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:24455020/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:30092657/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:3434098/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:10616461/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:5629796/65‑1 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGa                                                              >  1:19197913/1‑68 (MQ=255)
      agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAACCGGCTGCTGAAAAGGCAGCAGCTGATa                                                                 <  1:9427908/65‑1 (MQ=255)
        agaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa                                                            >  1:29939656/1‑68 (MQ=255)
        agaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa                                                            >  1:19907389/1‑68 (MQ=255)
         gaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa                                                            <  1:11092209/67‑1 (MQ=255)
         gaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGaaa                                                            <  1:24061337/67‑1 (MQ=255)
         gaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGa                                                              <  1:35117317/65‑1 (MQ=255)
           aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                                         >  1:36320473/1‑68 (MQ=255)
           aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                                         >  1:7887092/1‑68 (MQ=255)
           aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                                         >  1:17520515/1‑68 (MQ=255)
           aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                                         >  1:27314128/1‑68 (MQ=255)
             gCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                                       >  1:7654347/1‑68 (MQ=255)
             gCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                                       >  1:20659931/1‑68 (MQ=255)
             gCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                                       >  1:19541767/1‑68 (MQ=255)
             gCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                                       >  1:860580/1‑68 (MQ=255)
             gCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                                       >  1:33927764/1‑68 (MQ=255)
              cTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                                      >  1:1880243/1‑68 (MQ=255)
              cTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                                      >  1:28170536/1‑68 (MQ=255)
              cTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                                      >  1:29380202/1‑68 (MQ=255)
              cTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                                      >  1:6502200/1‑68 (MQ=255)
               tGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                                      >  1:32398834/1‑67 (MQ=255)
                  aGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                                                  >  1:30072649/1‑68 (MQ=255)
                  aGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                                                  >  1:34807110/1‑68 (MQ=255)
                  aGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                                                  >  1:28890454/1‑68 (MQ=255)
                  aGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                                                  >  1:1340985/1‑68 (MQ=255)
                   gCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                                                 >  1:4332455/1‑68 (MQ=255)
                   gCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                                                 >  1:16748820/1‑68 (MQ=255)
                     cGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                                                 <  1:23418482/66‑1 (MQ=255)
                          aaaaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                          >  1:10040850/1‑68 (MQ=255)
                          aaaaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgcc                                          <  1:13183992/68‑1 (MQ=255)
                            aaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGATGATAAGAAAGCAGCGGCAGAAAAAgccg                                         >  1:35700528/1‑67 (MQ=255)
                             aaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc                                       <  1:1183411/68‑1 (MQ=255)
                              agcagcAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc                                       >  1:27792765/1‑67 (MQ=255)
                              agcagcAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc                                       >  1:12400092/1‑67 (MQ=255)
                               gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                                     >  1:6562891/1‑68 (MQ=255)
                               gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                                     >  1:31424007/1‑68 (MQ=255)
                               gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                                     >  1:23024316/1‑68 (MQ=255)
                               gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                                     >  1:6988972/1‑68 (MQ=255)
                               gcagcaGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                                     >  1:11813974/1‑68 (MQ=255)
                                 agcagAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAg                                   >  1:6435552/1‑68 (MQ=255)
                                    agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc                                 <  1:3866847/67‑1 (MQ=255)
                                    agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc                                 <  1:16889077/67‑1 (MQ=255)
                                      aaaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaa                              >  1:31549582/1‑68 (MQ=255)
                                      aaaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaa                              >  1:17211797/1‑68 (MQ=255)
                                       cttatcaGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGCCaaaa                             <  1:33423678‑M1/61‑1 (MQ=255)
                                       aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGTAGAAAAAGCCGCCGCAGACa                                <  1:29883693/65‑1 (MQ=255)
                                         tatcagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa                           >  1:15357463‑M2/26‑68 (MQ=255)
                                         aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGGCGCCGCAGACaaaaaa                           >  1:29327641/1‑68 (MQ=255)
                                         aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa                           >  1:10002593/1‑68 (MQ=255)
                                         aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa                           >  1:26071137/1‑68 (MQ=255)
                                            cagctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:31503744‑M2/23‑68 (MQ=255)
                                            cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:38425109/1‑68 (MQ=255)
                                            cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:20836825/1‑68 (MQ=255)
                                            cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:23517823/1‑68 (MQ=255)
                                            cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:28150848/1‑68 (MQ=255)
                                            cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg                        >  1:26471540/1‑68 (MQ=255)
                                              gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc                      >  1:17839492‑M2/21‑68 (MQ=255)
                                              gctgctgccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcgg                       >  1:17282728‑M2/21‑67 (MQ=255)
                                              GCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACCAAACcgcggc                      <  1:31278541‑M1/68‑1 (MQ=255)
                                                     ccttttcagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAgcggcagcggca               >  1:21658610‑M2/14‑68 (MQ=255)
                                                     aaaaGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAgcggcagcggca               >  1:26204766/1‑68 (MQ=255)
                                                        agacagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:28515050‑M2/11‑68 (MQ=255)
                                                        aGGCAGCAGCTGATATGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:33816244/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:25560551/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:36408731/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:25442554/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:8572731/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:812529/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:13324143/1‑68 (MQ=255)
                                                        aGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGCCAGCGGCaaaa            >  1:16633088/1‑68 (MQ=255)
                                                         ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:26872858/1‑67 (MQ=255)
                                                         ggCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:32758905/1‑67 (MQ=255)
                                                          gcagcaGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:37836550/1‑66 (MQ=255)
                                                           cagcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCaaaa            >  1:8073142‑M2/8‑65 (MQ=255)
                                                             gcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGc       >  1:13166659‑M2/6‑68 (MQ=255)
                                                             gcagcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGc       >  1:17028820‑M2/6‑68 (MQ=255)
                                                               agcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa      >  1:34457809‑M2/4‑67 (MQ=255)
                                                                gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGTCAAAAGCTGCa      >  1:38650246‑M2/3‑66 (MQ=255)
                                                                gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa      >  1:20306078‑M2/3‑66 (MQ=255)
                                                                gcTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa      >  1:37506428‑M2/3‑66 (MQ=255)
                                                                gcTGATAAGAAAGCAGAGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCa      >  1:39012155‑M2/3‑66 (MQ=255)
                                                                  tGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTg  >  1:32795566/1‑68 (MQ=255)
                                                                  |                                                                   
GGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGCGGCAAAAGCTGCAGCTG  >  CP009273/772511‑772644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.