| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 289 (0.610) | 26 (0.070) | 9/94 | NT | 9.2% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 272 (0.680) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 488 total aligned reads displayed.
GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG > CP009273/1505813‑1505946 | cgtaGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:34058062/64‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:10121362/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:38653936/67‑1 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:32418552‑M1/53‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGTCGGCTGAACaat > 1:5286521/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:19642941/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:6388251/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:17583503/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:25272852/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:28661145/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:15486186/66‑1 (MQ=255) taattgttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACaattaa < 1:20751256‑M2/10‑1 (MQ=255) gtgCCTTCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:6796807/68‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:24523935/68‑1 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:23799281/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:35673013/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:22185182/1‑68 (MQ=255) gttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacagcggctGAACAATTAATTACg < 1:2757746‑M2/15‑1 (MQ=255) gttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:26890620‑M1/64‑1 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAg < 1:8597230‑M1/68‑1 (MQ=255) CCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa < 1:14298467‑M1/68‑1 (MQ=255) cgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGa < 1:9630010‑M2/21‑1 (MQ=255) CGCCGTGTATGGTTAAACAAGGAGATATTTTTACGTCACGGCGGCTGAACAATTTATTACGACAGGa > 1:29517636‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACTGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:4355605‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:38841244‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:12244361‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:34924409‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:36035799‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:31840348‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:24922737‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:17791538‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:28225697‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:11589285‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:16879515‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg < 1:3732269‑M1/68‑1 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:3463108‑M1/1‑68 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAACTACGACAGGa > 1:39408377‑M1/1‑67 (MQ=255) GCCGTCTATGGTTAACCAAGGAGATATTTTTACGGCACGGCGGCTGAACACTGACTTCAGACAggatt < 1:35962115‑M1/68‑3 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa > 1:12511931/1‑67 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:13572091/68‑1 (MQ=255) cgtaaaaatatctccatgtttaaccatagccggcggctGAACAATTAATTACGACAGGAGTAAGACCt < 1:4863210‑M2/30‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:36504536/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt > 1:38237958/1‑68 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:16522333/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt > 1:1676400/1‑68 (MQ=255) ggTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTa > 1:10675009/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:17040531/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:35324671/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:36624939/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:39004301/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:19370771/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:5742934/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:1124893/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:7418495/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:25703242/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:27216335/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:9251847/1‑68 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:11047232/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:14990328/68‑1 (MQ=255) aaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGc > 1:8825411/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa < 1:28060144/68‑1 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:13988203/1‑68 (MQ=255) cAAGGAGATATTTTTACTGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGaaa > 1:21111205/1‑68 (MQ=255) cAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCaa > 1:13342534/1‑68 (MQ=255) ggAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc > 1:26454320/1‑68 (MQ=255) gagaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACa > 1:14475041/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACa < 1:21975155/67‑1 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACAt > 1:7177056/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACAt > 1:30449459/1‑68 (MQ=255) agaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACAt > 1:30177195/1‑68 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTg > 1:1594322/1‑67 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc < 1:32333051/68‑1 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGCAGTAAGACCTTATGAGCAAGACATTTGc < 1:28314155/68‑1 (MQ=255) tttttACGGCACGGCGGCTGAACAAATGATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc > 1:26609841/1‑67 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGcc > 1:23378412/1‑67 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc > 1:24326188/1‑68 (MQ=255) tACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca < 1:12886465/68‑1 (MQ=255) tACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:18283176/1‑68 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcag < 1:17425486/68‑1 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcag < 1:31109426/68‑1 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:1632208/1‑67 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:22840755/1‑67 (MQ=255) acggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:4067397/1‑67 (MQ=255) cggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagc > 1:21480747/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagca < 1:11176959/68‑1 (MQ=255) acggcggctGATCAATTAATTACGACAGGAGTAAGACCTTATGAGCATGACATTTGCCCGGagctgc < 1:3764265‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGccgcag > 1:33635233‑M2/10‑66 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:38014052‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:20176090‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:36990257‑M2/58‑1 (MQ=255) cggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgt < 1:28972719‑M2/62‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGAGCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:23006950‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:32704705‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:8176679‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:18987890‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:33151472‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:11736395‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:34363632‑M2/63‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgcg < 1:31380030‑M2/67‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgc > 1:11980734‑M2/2‑67 (MQ=255) | GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCG > CP009273/1505813‑1505946 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |