New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129213 (0.450)17 (0.040) 9/94 NT 7.3% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 254 (0.640)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 371 total aligned reads displayed.

TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGT  >  CP009273/1823084‑1823216
                                                                  |                                                                  
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                               >  1:18333128‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggca                                                               >  1:2181828‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:24780789‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:20443358‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:7165575‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                                >  1:6333077‑M2/1‑63 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                             >  1:29334675‑M2/1‑60 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                             >  1:28117313‑M2/1‑60 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:38944336‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:29506572‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:12836641‑M2/1‑59 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                           >  1:6558243‑M2/1‑59 (MQ=255)
          cAACCAGACGAGCAAGAACCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:29599821/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcaggg                                                          >  1:32103839‑M2/1‑57 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:13142448/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:15916309/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:38734887/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                          <  1:3418925/67‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:26776216/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:31928435/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:11367093/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:3903163/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAAAAAACGGCGGGCGCAGGTGCAGc                                                     <  1:25605269/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                     <  1:10799812/68‑1 (MQ=255)
                 aCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                  >  1:14752007/1‑68 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcg                                                   >  1:38334664‑M2/1‑49 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGACCCGCTTTTCAGCGATAAACGGCGGGCGCAGGTGCAGCGTTg                                                 >  1:2099219/1‑68 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                                             >  1:31553681/1‑67 (MQ=255)
                        aGACACGCAGCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:853537/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:30438822/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:19007617/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:36639090/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:554242/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:12034593/68‑1 (MQ=255)
                          aaaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                           <  1:35502762/66‑1 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCt                                          <  1:497081/66‑1 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACCGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                        >  1:10357929/1‑68 (MQ=255)
                            aCGCATCGCCCCGCGCCCCCCCTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgt                                       >  1:3115613‑M2/1‑39 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                      <  1:26906020/68‑1 (MQ=255)
                               cATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACa                                    >  1:18823392/1‑68 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACa                                    >  1:32667214/1‑67 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACa                                    >  1:7523217/1‑67 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa                                   >  1:27925623/1‑68 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa                                   >  1:36031973/1‑68 (MQ=255)
                                 gcccccggcGCCCCGCTTTTCAGCAAAAAACGGCgggcgcagggcgaggggtttcttgctcgtctggt                                  >  1:4151083‑M2/4‑34 (MQ=255)
                                  cGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc                                 <  1:17350588/68‑1 (MQ=255)
                                    cccTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAACCg                                >  1:36843521/1‑67 (MQ=255)
                                    accTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCCGCGTTGACCGGCTGTGACAAACg                                >  1:6901728/2‑67 (MQ=255)
                                    accTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                >  1:11867151/2‑67 (MQ=255)
                                    accTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                                >  1:2519748/2‑67 (MQ=255)
                                     ccTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgcc                              <  1:3726607‑M2/68‑39 (MQ=255)
                                     ccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                              >  1:32742559/1‑68 (MQ=255)
                                     ccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                              >  1:2227081/1‑68 (MQ=255)
                                       tGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             >  1:16855803/1‑67 (MQ=255)
                                         cgcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGCCAAACGCCGAcg                          >  1:2355945/1‑67 (MQ=255)
                                         cgcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             >  1:28954399/1‑65 (MQ=255)
                                         cgcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             >  1:38627929/1‑65 (MQ=255)
                                         cgcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             >  1:8706934/1‑65 (MQ=255)
                                         cgcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg                             >  1:24003585/1‑65 (MQ=255)
                                         cgcCACGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGCCTGTGACAAACGCCg                             >  1:17968315/1‑65 (MQ=255)
                                          ggcccGGTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:28584880/3‑68 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAACCGCCGACTg                         >  1:884925/1‑68 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACt                          <  1:620218/67‑1 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:25955741/1‑68 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:38035880/1‑68 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:15220553/1‑68 (MQ=255)
                                          gcCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                         >  1:34399747/1‑68 (MQ=255)
                                           ccccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGCCATACGCCGACTGa                        >  1:36444401/1‑68 (MQ=255)
                                           ccccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        >  1:371319/1‑68 (MQ=255)
                                            cccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        <  1:20840244/67‑1 (MQ=255)
                                            cccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        <  1:23128173/67‑1 (MQ=255)
                                            cccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                        <  1:22761321/67‑1 (MQ=255)
                                             ccGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAt                      <  1:39610085/68‑1 (MQ=255)
                                              cGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGACGACTGAATg                     >  1:4652857/1‑68 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGGAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                    <  1:20761226/68‑1 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                    <  1:33529626/68‑1 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                    >  1:29138507/1‑68 (MQ=255)
                                                 tattCATCTATAAAGGGCGGGCGCAGGTGCAGCGTTGACTGGCTGTGTGAAACGCCGACTGAATGGt                   <  1:26399542/65‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                 >  1:10022769/1‑68 (MQ=255)
                                                    tCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGa               <  1:35869688/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt              <  1:27232785/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt              <  1:9419758/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt              <  1:1572874/68‑1 (MQ=255)
                                                       gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg            >  1:14804271/1‑68 (MQ=255)
                                                       gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATg             >  1:30221986/1‑67 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg            <  1:12320324/66‑1 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc          >  1:33236060/1‑68 (MQ=255)
                                                            aaaCGGCGGGCGCTGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc       <  1:20037324/68‑1 (MQ=255)
                                                            aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc       <  1:14968981/68‑1 (MQ=255)
                                                            aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc       <  1:3491484/68‑1 (MQ=255)
                                                             aaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      <  1:37866003/68‑1 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTc                  >  1:27628808/1‑55 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:13754985/1‑67 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc      >  1:19630140/1‑67 (MQ=255)
                                                               cggcggGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgc    >  1:7782782/1‑68 (MQ=255)
                                                                ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:35164517/1‑68 (MQ=255)
                                                                ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:17715734/1‑68 (MQ=255)
                                                                ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:21337176/1‑68 (MQ=255)
                                                                ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:3754609/1‑68 (MQ=255)
                                                                 gcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg   >  1:33816054/1‑67 (MQ=255)
                                                                  |                                                                  
TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGT  >  CP009273/1823084‑1823216

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.