| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2811634 | NA (NA) | 77 (0.300) +AATGGCGGTGAGGCGGGGATTCGAAC |
4/60 | NT | 27.7% | intergenic (‑1/+198) | argY/argV | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | = 2811844 | 376 (0.790) | noncoding (65/77 nt) | argV | tRNA‑Arg | |||||
Only 100 of 495 total aligned reads displayed.
TGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCA > CP009273/2811777‑2811909 | cGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGggag > 1:22317375/1‑68 (MQ=255) ggTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGggagg < 1:14981248/68‑1 (MQ=255) ttattaCGGCAACCTTTTCCATACCTTCATCGCGCAAATTACGTAGAATATGGTGCATCCGggagga < 1:37537593/67‑1 (MQ=18) gtattaCCTCCACCTCTTCCTTACATTCCTATATGACAGTACGTATAATATGGTGCATCCGGGAGGAt < 1:31167608/67‑1 (MQ=16) attaCCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTc < 1:7863199/68‑1 (MQ=255) ttaCCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCg > 1:24436815/1‑68 (MQ=255) aCCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGa > 1:32052075/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGaa > 1:29850065/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGaa > 1:26678908/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGaa > 1:8720747/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGaa > 1:23006328/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGaa > 1:6490080/1‑67 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAAc < 1:14455072/68‑1 (MQ=255) ccGCCACCTCTTCCATACCTTCATCGCTGAAAGTAAGTAGAATATGGTGCATCCGGGAGGATTCGAAc < 1:38732192/68‑1 (MQ=255) ccGCCACCTCTTCCAACCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAAc < 1:10146451/68‑1 (MQ=255) ccACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCt > 1:30851836/1‑67 (MQ=255) attCCATACCTTCTTCCCTGATATTACGTATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCg < 1:38229242/67‑1 (MQ=17) ttCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGAcc > 1:19861638/1‑66 (MQ=255) ttCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGc < 1:16410244/68‑1 (MQ=255) tCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGc > 1:15571950/1‑67 (MQ=255) tCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGc > 1:31495802/1‑67 (MQ=255) tCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGc > 1:6099320/1‑67 (MQ=255) cATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg > 1:27475522/1‑68 (MQ=255) cATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg > 1:35263914/1‑68 (MQ=255) cATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg > 1:35875247/1‑68 (MQ=255) cATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg > 1:23701009/1‑68 (MQ=255) aTACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCgg > 1:13627834/1‑68 (MQ=255) tcccTTCATAGCCGAAAGCACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt < 1:18244295/66‑1 (MQ=17) tACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt < 1:21470971/68‑1 (MQ=255) tACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt < 1:7229039/68‑1 (MQ=255) tACCTTCATCGCCCAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt < 1:23373084/68‑1 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:11597115/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:19352422/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:20450218/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:10715733/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:22008880/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:686173/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:30963325/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:18066011/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:34726658/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:37136565/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:7108302/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGt > 1:37833968/1‑67 (MQ=255) aCCTTCATCGCTGAAAGTAAGTAGAATATGGTGCATCCGGGAGGATAAGAACATCATACCGCACGGtt > 1:36690040/1‑68 (MQ=17) ccTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc > 1:19609079/1‑68 (MQ=255) ccTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc > 1:19054845/1‑68 (MQ=255) ccTTCAACGCGGAAAGCACGTATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc < 1:12595791/68‑1 (MQ=17) cTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg > 1:39358885/1‑68 (MQ=255) cTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg > 1:19721489/1‑68 (MQ=255) cTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg > 1:26048569/1‑68 (MQ=255) cTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg > 1:39068977/1‑68 (MQ=255) cTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg > 1:431450/1‑68 (MQ=255) ttCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGt > 1:4032536/1‑68 (MQ=255) aTCGCTGATAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc < 1:22583774/68‑1 (MQ=255) aTCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc < 1:10462534/68‑1 (MQ=255) aTCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc < 1:18924899/68‑1 (MQ=255) aTCGCGGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc < 1:33888714/68‑1 (MQ=255) tCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGcc > 1:16930375/1‑68 (MQ=255) tCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGcc > 1:25472748/1‑68 (MQ=255) tCGCTGAAAATACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGcc > 1:2415779/1‑68 (MQ=255) cGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCg < 1:26198381/68‑1 (MQ=255) cGCTGAAAGTACGAAGAATATGGTGCATCCGGGAGGATTCGAACCTCCTACCGCTCCGTTCGTAGCCg > 1:32588026/1‑68 (MQ=14) tGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGt < 1:18618337/68‑1 (MQ=255) cgAAATTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGt < 1:3034744/67‑1 (MQ=255) ataGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:35781767/66‑1 (MQ=255) aaaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:34920256/68‑1 (MQ=255) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:29208318/67‑1 (MQ=40) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:8071056/67‑1 (MQ=40) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:12911385/67‑1 (MQ=40) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:13215787/67‑1 (MQ=40) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:15955015/67‑1 (MQ=40) aaGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc < 1:34200046/67‑1 (MQ=40) aGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc > 1:25136915/1‑66 (MQ=39) gTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTActct > 1:26994276/1‑68 (MQ=37) tACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTa > 1:24904556/1‑68 (MQ=35) aagTATAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTAt < 1:20800105/66‑1 (MQ=9) aCGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTActct < 1:11173412/66‑1 (MQ=35) aCGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTAt < 1:11375559/68‑1 (MQ=35) gTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATcc > 1:17156424/1‑68 (MQ=33) tAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCa > 1:34489191/1‑68 (MQ=31) tGGTGCATCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagcaggtgagagtac < 1:5926152‑M2/68‑56 (MQ=255) tGCAACCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtact > 1:33101868‑M2/1‑10 (MQ=255) ctgcggggttcgaatccccgcctcaccgccatttgcatccgaagctcagctggatagagtactcggc > 1:11934649‑M2/4‑7 (MQ=255) aTCCTTGgatcgaatccccgcctccccgccatttgcatccgtagctcagctggatagagtactcggc > 1:5745715‑M2/1‑7 (MQ=255) aTCCGTGgatcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:28664327‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:9801543‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:12275535‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:28284294‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:277073‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:13977838‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:5604271‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:14184273‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:25659515‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:17528277‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:17882438‑M2/1‑7 (MQ=255) aTCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggc > 1:18429942‑M2/1‑7 (MQ=255) tCCGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggct < 1:33280384‑M2/67‑62 (MQ=255) cGGGgttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggctacg < 1:8964756‑M2/68‑65 (MQ=255) ggggttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggctacga > 1:477361‑M2/1‑3 (MQ=255) ggggttcgaatccccgcctcaccgccatttgcatccgtagctcagctggatagagtactcggctacga > 1:36319682‑M2/1‑3 (MQ=255) | TGCGGTTATTACCGCCACCTCTTCCATACCTTCATCGCTGAAAGTACGTAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCA > CP009273/2811777‑2811909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |