| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3060669 = | 394 (0.830) | 16 (0.040) | 7/92 | NT | 5.7% | intergenic (‑137/+30) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein |
| ? | CP009273 | 3060693 = | 206 (0.530) | intergenic (‑161/+6) | ygfI/yggE | putative DNA‑binding transcriptional regulator/oxidative stress defense protein | |||||
Only 100 of 486 total aligned reads displayed.
ACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACAT > CP009273/3060626‑3060760 | acagaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGATTACGTCGGGCTAc < 1:28605650/68‑1 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:14411174/1‑68 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:12866778/1‑68 (MQ=255) agaaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa > 1:23996533/1‑68 (MQ=255) taaaattactgaaaaAGGAGGCAATATCGGGT‑AAGGCATTAGCCCGACTAATACGTCGGGCTACAAat < 1:38167454/67‑1 (MQ=255) aaaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:37081131/68‑1 (MQ=255) aacaacccgctaaaacacctgcagcacaataatatttgTAGCCCGACGAATACGTCGGGCtacaataa < 1:6864245‑M1/30‑4 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:22736060/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:3487262/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACaa < 1:5007466/65‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACa < 1:7531047/64‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACa < 1:17856510/64‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACa < 1:1640728/64‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAata < 1:13373792/68‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:32818618/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:26423643/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:38676949/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:4572808/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:31635401/67‑1 (MQ=255) aaattacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:6347075/67‑1 (MQ=255) aaattacacaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAat < 1:12113827/67‑1 (MQ=255) attacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtatt < 1:5167060/68‑1 (MQ=255) attacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtatt < 1:17182744/68‑1 (MQ=255) attacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtatt < 1:10661034/68‑1 (MQ=255) tacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtattat < 1:30754990/68‑1 (MQ=255) tacagaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAAtattat < 1:14683076/68‑1 (MQ=255) agaagaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTAGAAATATTAT‑‑tgt > 1:28329071/1‑68 (MQ=255) agaaaaAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑tgt > 1:13684031/1‑68 (MQ=255) taaaacacctgcagcacaataatatttgtagcccgacgtattcgtcgggctaCAAATATTAT‑‑TGtgct < 1:35271418‑M2/16‑1 (MQ=255) taaaacacctgcagcacaataatatttgtagcccgacgtattcgtcgggctaCAAATATTAT‑‑TGtgc < 1:10901215‑M2/15‑1 (MQ=255) aaaaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑tgtg < 1:28910587/66‑1 (MQ=255) aaaaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑tgt > 1:11769168/1‑65 (MQ=255) aaaaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGtgct < 1:16060497/68‑1 (MQ=255) aaacacctgcagcacaataatatttgtagcccgccgtattcgtcgggctaCAAATATTAT‑‑TGtgctgc < 1:19069730‑M2/18‑1 (MQ=255) aaGGAGGCTATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGtgctgc < 1:26990438/68‑1 (MQ=255) aaGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGtgctgc < 1:33831189/68‑1 (MQ=255) aggaggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCa > 1:3129197/1‑68 (MQ=255) aggaggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCa > 1:10560477/1‑68 (MQ=255) gaggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAgg > 1:15772844/1‑68 (MQ=255) acctgcagcacaataatatttgtagcccgacgtattcggcgggctaCAAATATTAT‑‑TGTGCTGCAGgt < 1:30361586‑M2/22‑1 (MQ=255) acctgcagcacaataatatttgtagcccgacgtaatcgtcgggctaCAAATATTAT‑‑TGTGCTGCAGgt < 1:33220231‑M2/22‑1 (MQ=255) acctgcagcacaataatatttgTAGCCCGACGAATACGTCGGGCTACATATATTAT‑‑TGTGCTGCAGgt < 1:25417765‑M1/46‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGgt < 1:21186034/67‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGgt < 1:22455720/67‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGgt < 1:31915319/67‑1 (MQ=255) ggCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGgt < 1:27622986/67‑1 (MQ=255) cAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGgtgt < 1:29966976/67‑1 (MQ=255) aaTATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGttt < 1:29579258/68‑1 (MQ=255) aaTATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGttt < 1:34278854/68‑1 (MQ=255) atatCGTGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGtttt < 1:25095796/68‑1 (MQ=255) agcacaataatatttgTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTa < 1:10012407‑M1/52‑1 (MQ=255) agcacaataatatttgTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑AGTGCTGCAGCTGTTTTa < 1:28794292‑M1/52‑1 (MQ=255) atCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTa > 1:7807397/1‑67 (MQ=255) aataatatttgtagcccgacgtattcgtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGNTTTAGCggg < 1:19015623‑M2/33‑1 (MQ=255) gTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgt > 1:11077430/1‑68 (MQ=255) tAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgt < 1:16759151/67‑1 (MQ=255) tAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgt < 1:14115612/67‑1 (MQ=255) aaaGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgtt < 1:39090330/67‑1 (MQ=255) aGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgttgtt < 1:724268/68‑1 (MQ=255) aGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgttgtt < 1:13875371/68‑1 (MQ=255) aGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGgttgtt < 1:32601816/68‑1 (MQ=255) ggCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGttgttg > 1:26071006/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:4797774/1‑68 (MQ=255) gCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:11582203/1‑68 (MQ=255) cATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGa > 1:36119198/1‑67 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGAt < 1:2063964/67‑1 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGAt < 1:36236456/67‑1 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATc < 1:9652452/68‑1 (MQ=255) aTTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGATGTTTTAGCGGGTTGTTGac < 1:30915395/67‑2 (MQ=255) GCCCGACGAATACGTCGGGCTACAAATAATAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCcaca < 1:24356878‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGCTCCACAg < 1:24705794‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:34136269‑M1/68‑1 (MQ=255) CCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAg < 1:23698879‑M1/68‑1 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:37394216‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:23089575‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:5659956‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:5397845‑M1/1‑68 (MQ=255) CCGACGAATACGTCGGGCTAAAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAgg > 1:17432662‑M1/1‑68 (MQ=255) CGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGt > 1:35978632‑M1/1‑68 (MQ=255) GAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTa > 1:22128143‑M1/1‑68 (MQ=255) aTACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTaa < 1:35197622/67‑1 (MQ=255) aTACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTaa < 1:36673349/67‑1 (MQ=255) tACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:10278438/68‑1 (MQ=255) tACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:9340752/68‑1 (MQ=255) tACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACt < 1:21604653/68‑1 (MQ=255) aCGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTg > 1:18440470/1‑68 (MQ=255) aCGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTg > 1:8176133/1‑68 (MQ=255) cgtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTgg > 1:38328726‑M2/11‑68 (MQ=255) cgtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTgg > 1:16893945‑M2/11‑68 (MQ=255) gtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGa > 1:20900042‑M2/10‑68 (MQ=255) gtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGa > 1:19823985‑M2/10‑68 (MQ=255) gtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGa < 1:11899332‑M2/59‑1 (MQ=255) gtcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGa > 1:8559604‑M2/10‑68 (MQ=255) tcgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGaa > 1:35511725‑M2/9‑68 (MQ=255) cgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAg < 1:20193660‑M2/61‑1 (MQ=255) cgggctaCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAg > 1:15130694‑M2/8‑68 (MQ=255) taCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:37630960‑M2/66‑1 (MQ=255) taCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:12339616‑M2/66‑1 (MQ=255) taCAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:34637211‑M2/66‑1 (MQ=255) cAAATATTATTGTGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACcac < 1:9294046/68‑1 (MQ=255) | ACAGAAAATTACAGAAAAAGGAGGCAATATCGGGTAAAGGCATTAGCCCGACGAATACGTCGGGCTACAAATATTAT‑‑TGTGCTGCAGGTGTTTTAGCGGGTTGTTGATCCACAGGTTCTAACTGGAAGACCACAT > CP009273/3060626‑3060760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |