New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3215213 =421 (0.890)44 (0.110) 11/96 NT 10.3% coding (389/984 nt) ebgR transcriptional repressor
?CP009273 3215274 = 404 (0.990)coding (450/984 nt) ebgR transcriptional repressor

Only 100 of 665 total aligned reads displayed.

TGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAG  >  CP009273/3215207‑3215340
                                                                   |                                                                  
 cgtaaCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGCACCCGGCAGCGGtt                                                                   <  1:30931131‑M1/63‑1 (MQ=255)
   gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc                                                                 >  1:26830219/1‑68 (MQ=255)
   gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc                                                                 >  1:3699440/1‑68 (MQ=255)
   gcgcCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTAc                                                                 >  1:6396512/1‑68 (MQ=255)
    aaccgctgccgggttcgtgaaagtcgataaaacagatattgtcggtcaacgcgctggcagcggTTAc                                                                 <  1:14234218‑M2/4‑1 (MQ=255)
     gccgcTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACg                                                                <  1:15872216/67‑1 (MQ=255)
      CCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              <  1:37974306‑M1/68‑1 (MQ=255)
       CGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              >  1:21480175‑M1/1‑67 (MQ=255)
       CGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              <  1:15396148‑M1/67‑1 (MQ=255)
       CGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              <  1:4318371‑M1/67‑1 (MQ=255)
       CGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              <  1:29707904‑M1/67‑1 (MQ=255)
       CGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGAt                                                              <  1:35518053‑M1/67‑1 (MQ=255)
        GCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGc                                                            >  1:39466594‑M1/1‑68 (MQ=255)
          tgccgggttcgtgaaagtcgataaaacagatcttgtcggtcaacgcgctggcagcggTTACGATGCgg                                                          <  1:34532866‑M2/11‑1 (MQ=255)
          tgccgggttcgtgaaaggcgataaaacagatattgtcggtcaccgcgctggcagcggTTACGATGCgg                                                          <  1:7043464‑M2/11‑1 (MQ=255)
           GCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGt                                                         >  1:4851372‑M1/1‑68 (MQ=255)
           GCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGt                                                         >  1:13267586‑M1/1‑68 (MQ=255)
            CCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGt                                                         >  1:11599943‑M1/1‑67 (MQ=255)
             cgggttcgtgaaagtcgataaaacaggtattgtcgggcaacgcgctggcagcggTTACGATGCGGTgg                                                       <  1:9780625‑M2/14‑1 (MQ=255)
             cgggttcgggaaagtcgataaaaccgctattggcggtcaccgcgctggcagcggTTACGATGCGGTgg                                                       <  1:32620693‑M2/14‑1 (MQ=255)
             CAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTgg                                                       >  1:33549311‑M1/1‑68 (MQ=255)
             CAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTg                                                        >  1:15105995‑M1/1‑67 (MQ=255)
              gggttcgtgaaaggcgataaaaccgatattggcgggcaacgcgcgggcagcggTTACGATGCGGTGGa                                                      <  1:6620576‑M2/15‑1 (MQ=255)
              ggggtcgtgaaactcgataacccagatattgtcggtccccgcgctggcagcggTTACGATGCGGTGGa                                                      <  1:35251029‑M2/15‑1 (MQ=255)
                cgcgTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGata                                                    >  1:5611280/1‑68 (MQ=255)
                cgcgTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGata                                                    >  1:28089043/1‑68 (MQ=255)
                 gcgTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGat                                                     <  1:32032919/66‑1 (MQ=255)
                  tcgtgaaagtcgataaaacagatattgtcgggcaacgcgctggcagcggTTACGATGCGGTGGATATc                                                  <  1:17165426‑M2/19‑1 (MQ=255)
                  gcgtgacagtcgataaaacagatcttgtcggtcaacgcgcgggcagcggTTACGATGCGGTGGATATc                                                  <  1:17898306‑M2/19‑1 (MQ=255)
                  cgTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATc                                                  >  1:8692895/1‑68 (MQ=255)
                     tGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGa                                                <  1:25939351/67‑1 (MQ=255)
                     tGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGAt                                               <  1:33195320/68‑1 (MQ=255)
                     tGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGAt                                               <  1:23503460/68‑1 (MQ=255)
                     tGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGAt                                               <  1:742365/68‑1 (MQ=255)
                       aCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGa                                                >  1:6023080/1‑65 (MQ=255)
                         cGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTgg                                           <  1:39335305/68‑1 (MQ=255)
                           aCAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGc                                          >  1:16007757/1‑67 (MQ=255)
                             aaTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCAc                                        >  1:29868290/1‑67 (MQ=255)
                             aaTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACg                                       <  1:20702972/68‑1 (MQ=255)
                             aaTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACg                                       <  1:38955280/68‑1 (MQ=255)
                             aaTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCAGGCAc                                        >  1:18622019/1‑67 (MQ=255)
                             aaTATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATAGCGATCTGGCAc                                        >  1:28377938/1‑67 (MQ=255)
                               tatCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCa                                     <  1:30303949/68‑1 (MQ=255)
                               tatCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCa                                     <  1:19848646/68‑1 (MQ=255)
                               tatCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCa                                     <  1:4200435/68‑1 (MQ=255)
                                atCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCa                                     >  1:27667671/1‑67 (MQ=255)
                                 tCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATc                                   <  1:20257697/68‑1 (MQ=255)
                                 tCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATc                                   <  1:27471521/68‑1 (MQ=255)
                                 tCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATc                                   >  1:33969538/1‑68 (MQ=255)
                                 tCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATc                                   >  1:20898669/1‑68 (MQ=255)
                                  cTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCa                                  >  1:15621181/1‑68 (MQ=255)
                                  cTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCa                                  >  1:31301435/1‑68 (MQ=255)
                                   tGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAg                                 >  1:34150060/1‑68 (MQ=255)
                                   tGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAg                                 >  1:13427701/1‑68 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGTCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:24871799/68‑1 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:36635774/68‑1 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:13976398/68‑1 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:1210940/68‑1 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:8044037/68‑1 (MQ=255)
                                    gTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGt                                <  1:19148334/68‑1 (MQ=255)
                                     ttttATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTa                               >  1:22829089/1‑68 (MQ=255)
                                      tttATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaa                              >  1:22326647/1‑68 (MQ=255)
                                      tttATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaa                              >  1:3734638/1‑68 (MQ=255)
                                      tttATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaa                              >  1:29203321/1‑68 (MQ=255)
                                      tttATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTaa                              >  1:28935445/1‑68 (MQ=255)
                                         aTCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGa                           <  1:22564359/68‑1 (MQ=255)
                                           cGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGaaa                         >  1:10330633/1‑68 (MQ=255)
                                           cGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGaaa                         >  1:16426207/1‑68 (MQ=255)
                                           cGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGaaa                         >  1:5127133/1‑68 (MQ=255)
                                           cGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGaaa                         >  1:24236620/1‑68 (MQ=255)
                                           cGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGaaa                         >  1:24472567/1‑68 (MQ=255)
                                            gACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAat                        <  1:1693019/68‑1 (MQ=255)
                                             aCTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAatc                       >  1:11062063/1‑68 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:12522438/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:9204199/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:9426074/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:36317423/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:25437218/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                >  1:26511913/1‑68 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:36067644/68‑1 (MQ=255)
                                                    cGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACt                <  1:24019704/68‑1 (MQ=255)
                                                     gAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACtt               <  1:17481283/68‑1 (MQ=255)
                                                       aCCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGTCACGCATCAGTAAAGAAATCATCGACTTCt             >  1:23025528/1‑68 (MQ=255)
                                                       aCCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCt             >  1:14388000/1‑68 (MQ=255)
                                                       aCCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCt             >  1:12840227/1‑68 (MQ=255)
                                                        cccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCta            <  1:14729153/68‑1 (MQ=255)
                                                        cccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCta            <  1:4536225/68‑1 (MQ=255)
                                                        cccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCta            <  1:3476791/68‑1 (MQ=255)
                                                        cccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCta            <  1:10590929/68‑1 (MQ=255)
                                                         ccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCtat           <  1:38451613/68‑1 (MQ=255)
                                                         ccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCtat           <  1:8351241/68‑1 (MQ=255)
                                                         ccGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCtat           <  1:37677346/68‑1 (MQ=255)
                                                           ggcagcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTatat         <  1:10077154‑M2/60‑1 (MQ=255)
                                                           ggcagcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTatat         <  1:38360849‑M2/60‑1 (MQ=255)
                                                              agcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCa       <  1:7609123‑M2/62‑1 (MQ=255)
                                                              agcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCa       <  1:33040372‑M2/62‑1 (MQ=255)
                                                               gcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCaa      >  1:21162682‑M2/5‑67 (MQ=255)
                                                               gcggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCaa      >  1:19445403‑M2/5‑67 (MQ=255)
                                                                 ggTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAAc     <  1:30505911‑M2/64‑1 (MQ=255)
                                                                  gTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAg  >  1:21969391‑M2/2‑68 (MQ=255)
                                                                   |                                                                  
TGCGCGCCGCTGCCAGCGCGTTGACCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAG  >  CP009273/3215207‑3215340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.