| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701734 = | NA (NA) | 17 (0.040) | 8/96 | NT | 7.8% | intergenic (‑669/+242) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701742 = | 236 (0.500) | intergenic (‑677/+234) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 552 total aligned reads displayed.
ACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > CP009273/3701676‑3701786 | acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCgg > 1:30670902/1‑68 (MQ=255)acaTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCg < 1:19079943/67‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:5910589/68‑1 (MQ=255) ttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt < 1:919780/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 1:27834521/68‑1 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:13146467/1‑67 (MQ=255) tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGt > 1:3398519/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:2062280/1‑67 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtc > 1:28974493/1‑67 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGCACCTCCCTGCCCACGGAGGTtctc > 1:14754037/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:20061041/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:21153797/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:17823794/1‑68 (MQ=255) cTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctc > 1:29313845/1‑68 (MQ=255) tGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCa < 1:39470470/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCa > 1:34485905/1‑67 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:7066855/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:11454014/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:25660120/68‑1 (MQ=255) gATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt < 1:15865395/68‑1 (MQ=255) aacgagcaggcttttttgcatctgcagctcatgaggatgagaacctccgggggcagGGAGGTTCTCAt < 1:338066‑M2/12‑1 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTtctcct > 1:34239060/1‑64 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt > 1:22584601/1‑66 (MQ=255) tGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCAt > 1:21588927/1‑66 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCtcctcc > 1:7590758/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATcc > 1:15283181/1‑67 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:36910753/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:38084232/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:30120348/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:5380260/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:565709/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:19416248/68‑1 (MQ=255) gCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCt < 1:9809771/68‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCtgatga > 1:35657506/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa > 1:30901343/1‑68 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa < 1:35372310/68‑1 (MQ=255) gCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGa < 1:22876568/68‑1 (MQ=255) tGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGc < 1:11180731/68‑1 (MQ=255) tGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGc < 1:18943718/68‑1 (MQ=255) ttttttgcatctgcagcccatgaggatgagaacctccgggggcagGGAGGTTCTCATCCTCATGAGc < 1:17501465‑M2/22‑1 (MQ=255) gACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCt < 1:37560681/68‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:1606185/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc < 1:5157315/68‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:6185268/1‑68 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc < 1:31875712/68‑1 (MQ=255) cgcgTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGc > 1:36367889/1‑68 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt > 1:23340831/1‑67 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt > 1:24961212/1‑67 (MQ=255) cTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGAt < 1:12275114/67‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:12896423/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:1967107/68‑1 (MQ=255) aTCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaa < 1:18600112/68‑1 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:36708016‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:13731049‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:13907386‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:37305006‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:1465965‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:30434893‑M1/1‑68 (MQ=255) tCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAA > 1:7902119‑M1/1‑68 (MQ=255) aGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:24605407‑M1/1‑68 (MQ=255) aGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAA > 1:26019717‑M1/1‑68 (MQ=255) gCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAA > 1:10603676‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGCTGCAAAAAAG > 1:6506403‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:20218099‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:21921611‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:24051728‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:4298114‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:18218171‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:38444900‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:9559932‑M1/1‑67 (MQ=255) ccTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > 1:8455447‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGTGGTTCTCATCCTCATGAGCTGCAGATGCAATAAAGCCTGC > 1:29792464‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCCTCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:27034753‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:33884252‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14412894‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:16750867‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:32580961‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:14174966‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:28717962‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:10030628‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:8710633‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:17212732‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26129969‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:12534113‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:26460613‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:6953178‑M1/1‑67 (MQ=255) gtcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCGCATGAGCTGCAGATGCAAAAAAGCCTGC > 1:1500332‑M1/1‑67 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:27368680‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:4781886‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:39037469‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:35987113‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:34823293‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:31056526‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:2635046‑M1/68‑1 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > 1:25451788‑M1/1‑68 (MQ=255) tcgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:10241985‑M1/68‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:33205161‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:2830317‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:24240196‑M1/67‑1 (MQ=255) cgagtcgaACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC < 1:11601441‑M1/67‑1 (MQ=255) | ACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAGCCTGCTC > CP009273/3701676‑3701786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |