New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4230085 =	NA (NA)	5 (0.010)	4/98	NT	NA	noncoding (1/37 nt)	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	CP009273	4230118 =	NA (NA)					noncoding (34/37 nt)	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP314 (repetitive extragenic palindromic) element; contains 1 REP sequences

GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4230157‑4230085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  CP009273/4230118‑4230184                                                                                                                                              GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGAGAAGGCGCGCCTGGCGGCGCAT                                                                          <  1:9719055/68‑1  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:15740207/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:25842369/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:26177956/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:29853777/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:19815525/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:19794082/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:32110655/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:17906151/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:16631469/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:3455627/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:14084182/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:4602978/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:10675378/1‑67  GAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCAT                                                                          >  1:4634332/1‑67   AGCGCGCCTCCACCAAAGCCGGATATACCTCCCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:4143955/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:568248/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:25517620/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:9480898/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:26882769/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:2791396/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:28355193/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:9439745/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:9404538/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:7239961/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:31123534/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:4572895/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:3267301/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:5293919/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:4698642/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:33507786/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:10332955/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:4339084/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:24343476/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:10264261/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:23506415/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:10705230/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:12948546/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTAGCGGCGCATCC                                                                        >  1:29088387/1‑68   AGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCCGATAAGCCGCGCCTGGCGGCGCATCC                                                                        >  1:18852998/1‑68    GCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:12033477/68‑1    GCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       >  1:30762437/1‑68      GCGCCTCCACCAAAGCCGGATATCCCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:12878135/66‑1      GCGCCTCCACCAAAGCCGGATATCCCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:11620692/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC                                                                     <  1:3824744/68‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:29035851/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:18036581/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:30803324/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:28549249/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:22776012/66‑1      GCGCCTCCACCAAAGCCGGATATACCTACCCGTAGCCCGGATAAGCCGCGCCTGGCGGCGCATCCG                                                                       <  1:26540571/66‑1            CCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGG                                                               <  1:28880363/68‑1                CAAAGCCGGATATACCACCCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAG                                                           <  1:7506792/68‑1                            TACCTACCCGTCGGCCGGATACGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCT                                               <  1:33322284/68‑1                            TACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCT                                               <  1:11234714/68‑1                                 cCCCGAAGGCCGCATAAGCCGCGCCTGGCGGCGCATCCGGCCTACGGGTAGGTATATCCGGCTTTGGT                                          <  1:16622461/67‑1                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:1354738/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:2381325/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:13542325/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:11050759/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:26336294/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:21276991/1‑68                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       <  1:5703800/68‑1                                                                    TCCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:20722500/1‑68                                                                     CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:25613615/1‑67                                                                     CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:21100760/1‑67                                                                     CCGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACAT       >  1:2591934/1‑67                                                                      CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     <  1:16296608/68‑1                                                                      CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:2655169/1‑68                                                                      CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:26243226/1‑68                                                                      CGGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATAC     >  1:26204528/1‑68                                                                       GGCCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACA    <  1:12993929/68‑1                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:32621803/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:323874/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:18644023/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:32044505/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:28476322/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  1:10950570/1‑68                                                                         CCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACAC   <  1:1564549/67‑1                                                                                                                                              GGAGCGCGCCTCCACCAAAGCCGGATATACCTACCCGTAGGCCGGATAAGCCGCGCCTGGCGGCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4230157‑4230085 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACGGGTAGGTATATCCGGCTTTGGTGGAGGCGCGCTCCAAATCCAGGTTGAACAAAACATACACA  >  CP009273/4230118‑4230184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.