| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 438477 | NA (NA) | 7 (0.020) | 7/88 | NT | NA | noncoding (4/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 438479 | NA (NA) | noncoding (6/32 nt) | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 116 total aligned reads displayed.
GCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438400‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 GCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTAC > 1:29021529/1‑68 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:20889146/1‑68 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:17969696/1‑68 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:11854079/1‑68 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTAC < 1:29569298/67‑1 CGCTCTATCTGCGCGAGCAGGGCTTTAACAATGAGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG > 1:10008205/1‑68 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:7594009/67‑1 GCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACG < 1:2810624/67‑1 TATCTGCGCGTGCAGGGCTTTAACAATGTGAATGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:26393287/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:4406721/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:22993681/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:21866081/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:5420503/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:34458070/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:19518848/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:27397958/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:6653473/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:1701349/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:1599244/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:33195908/68‑1 TATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:14370450/68‑1 ATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:693812/1‑67 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCTTAATTTGTGGTTTTTACGTCGCA > 1:12339593/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATC < 1:10889532/68‑1 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATC < 1:4582782/68‑1 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATC < 1:10849484/68‑1 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:33956428/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:3329590/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:7701676/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:2254972/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:15716986/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:18041154/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:26388836/1‑66 TCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:28370323/1‑66 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:23758338/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCT < 1:11360234/68‑1 CTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA > 1:10408688/1‑65 tgaGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:23261858/4‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGTTAGATCGCCGGTAATTTGTGTTTTTTACGTCGCATCTG > 1:19415699/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:33132180/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:5431404/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:24149355/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:3783182/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:29343130/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:1938013/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:15723312/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:18196826/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:18724041/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:14056177/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:11464748/1‑68 TGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG > 1:5959489/1‑68 GGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCA < 1:25256361/53‑1 CTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGCCCAGATGCGACG > 1:6239741/1‑68 ACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAA > 1:19257222/1‑68 AGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAAT > 1:22881179/1‑68 ATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGG > 1:32092550/1‑68 CGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCG > 1:19794802/1‑68 TGGTTTTTACGTCGCATCTGCCCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACA > 1:17877620/1‑68 aatCGTAGCATCTGACCAGATGCTATGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTT < 1:31285418/64‑1 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:10668818/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:946960/1‑68 ACGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA < 1:26749250/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:30749095/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:32997815/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:6378021/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:30173019/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:2955885/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:2195903/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG < 1:4474179/68‑1 CGTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAA > 1:34121869/1‑67 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC < 1:10095544/68‑1 GTCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAG > 1:15113964/1‑67 TCGCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC > 1:17938089/1‑67 GCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT < 1:33382785/68‑1 GCATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGC > 1:30241796/1‑65 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:10198387/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:32994772/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:22441196/67‑1 ATCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCT > 1:1181201/1‑66 ATCGGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTG < 1:23427558/67‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCT < 1:9533498/68‑1 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:5365106/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:21409303/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:21498527/1‑67 TCTGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGC > 1:26001805/1‑67 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTACAGCCCTGCTCG < 1:7423518/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:22118350/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:2290137/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:21660451/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:19083853/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:18235099/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:6409126/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:26481731/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:33373439/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:29134475/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:11235645/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:8494628/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:29371351/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < 1:3292617/68‑1 TGACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTC > 1:24770739/1‑67 GCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/438400‑438477‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgtcgcatctgACCAGATGCGACGTAAAAACCACAAATTACGGGCGATATACCTTCACATTGTTAAAGCCCTGCTCG < CP009273/438479‑438414 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |