| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 150 total aligned reads displayed.
ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA < 1:32983012/68‑1ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCA > 1:30999651/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:4453718/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:32027868/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:8703422/1‑68 GGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCC > 1:24990411/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:15569082/1‑68 GTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG > 1:30666840/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG > 1:31707871/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG > 1:34514976/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG > 1:22261070/1‑68 TGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCG < 1:15845093/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:21369260/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:29763218/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:301970/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:13700672/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:1816332/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGA < 1:17207315/68‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:1008291/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:10860168/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:16926148/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:24681879/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:6028522/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:7524716/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:8109286/67‑1 GAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:8464157/67‑1 AAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGAT > 1:13157015/1‑68 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:12194266/1‑68 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:17856725/1‑68 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATG > 1:26199105/1‑68 AGCGGCAACTATCAGCGACGGCCTGGCGCGCGGTAATCAGGCATTTTAATTCGTTTCTCAGCCGGAT > 1:12288277/1‑67 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:2238738/1‑68 GCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:1047093/68‑1 GCGGCAACTATCAGCGACGGACAGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:34553680/1‑68 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:30226800/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:29928988/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:19912887/1‑67 CGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA > 1:140940/1‑67 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:2039048/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:10617616/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:10861635/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:9173171/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:11389672/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:28642777/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:31648374/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:26250229/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:6080572/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:14088410/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:31799765/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:25384953/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:24343738/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:23635092/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:3380666/66‑1 GGCAACTATCAGCGACGGCCTGGCGCGCGTTAAACAGGCATTTTAATTCTTTTCTCAGCCGGATGA < 1:29625001/66‑1 GCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGG < 1:18239612/45‑1 CAGGCATTTTAATTCTTTTCTCAGCCGGATGACATGGCTCGTCCGGGTGAGAAAAGAATTAAAATG > 1:2939187/1‑66 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:5414612/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:8599101/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:30744467/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:32829782/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:4074145/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:9402636/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:21599360/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:1373556/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:13271463/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:23251269/68‑1 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:5723783/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:14573747/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:13000328/1‑67 AGCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCG > 1:32559515/1‑67 GCCGGTTGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCCGGCCGTC > 1:2742621/1‑68 GCCGGTTGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:11175763/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:23290695/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:1998666/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:15188508/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:33169549/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:32998360/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:21864241/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:31735615/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:12374611/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:12166634/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:31100697/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:27221444/1‑68 GCCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:1017147/1‑68 CCGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTC > 1:20359955/1‑67 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:18450648/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:21701976/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:6825128/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGC < 1:2875825/68‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:34762854/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:7898158/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCG < 1:31482628/67‑1 CGGATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGT < 1:25532941/65‑1 ATGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA > 1:29576693/1‑68 TGACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGA < 1:3828848/67‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA < 1:25805447/68‑1 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:26863050/1‑68 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATA > 1:8940209/1‑68 GACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTA > 1:29202593/1‑44 ACATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG > 1:13384319/1‑68 ACGGGTGAAGCGGCAACTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/831610‑831686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccggatgaCATGGCTCATCCGGCTGAGAAAAGAATTAAAATGCCTGATTAACGCGCGCCAGGCCGTCGCTGATAG < CP009273/831692‑831626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |