| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 831686 | NA (NA) | 3 (0.010) | 3/92 | NT | NA | noncoding (9/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 831692 | NA (NA) | noncoding (15/24 nt) | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 351 total aligned reads displayed.
CTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCG > CP009273/831626‑831759 | cTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATg > 1:18537963/1‑67 (MQ=255)cTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGt > 1:13384319‑M2/1‑67 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcat > 1:29576693‑M2/1‑64 (MQ=255) tCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtca < 1:3828848‑M2/67‑4 (MQ=255) gCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:32149323‑M2/68‑8 (MQ=255) cGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccg < 1:34762854‑M2/67‑8 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:1017147‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:31735615‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:31100697‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:27221444‑M2/1‑59 (MQ=255) gACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggc > 1:23290695‑M2/1‑59 (MQ=255) gACGGCCGGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcaaccggc > 1:2742621‑M2/1‑59 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:9402636‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:8599101‑M2/68‑11 (MQ=255) aCGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct < 1:30744467‑M2/68‑11 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggct > 1:13000328‑M2/1‑57 (MQ=255) cGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtt < 1:4933476/68‑1 (MQ=255) ccTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCtttt > 1:167266/1‑67 (MQ=255) cgcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTGATCCGGCTTTTAcccc > 1:14870540/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCa > 1:26531624/1‑67 (MQ=255) gcgcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAc < 1:19121349/68‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:7235148/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:8961048/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:30873366/67‑1 (MQ=255) gcgTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCAcc < 1:16035810/67‑1 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGtcatccggctgagaaaagaatta > 1:27070840‑M2/1‑44 (MQ=255) gTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCa < 1:19443765/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCaa < 1:17185817/67‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:30146459/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:8764216/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:24388975/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:10459891/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:18240074/68‑1 (MQ=255) tAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAat < 1:17895482/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:26733530/68‑1 (MQ=255) aTCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:31310304/68‑1 (MQ=255) aTCAGGCATTTTAATTATTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAatat < 1:3972757/68‑1 (MQ=255) tCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATg > 1:7939801/1‑68 (MQ=255) tCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATg > 1:10799841/1‑68 (MQ=255) tCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATg > 1:23878454/1‑68 (MQ=255) tCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATg < 1:21918842/68‑1 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:25984908/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:21344842/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:23553581/1‑68 (MQ=255) cAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGa > 1:24704565/1‑68 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAtt > 1:2908711/1‑68 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:32963012/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:33626133/1‑67 (MQ=255) cATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAt > 1:20740156/1‑67 (MQ=255) cATTTTAATTCTTTTCTCACCCGGACGAGCCATGtcatccggctgagaaaagaattaaaatgcctg > 1:2939187‑M2/1‑34 (MQ=255) aTTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAAtt < 1:19930859/67‑1 (MQ=255) tAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGc < 1:31987818/68‑1 (MQ=255) ttCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATc < 1:20116193/68‑1 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:12213202/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:17351203/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:6197316/1‑68 (MQ=255) tCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCt > 1:17731023/1‑68 (MQ=255) cTTTTCTGAGCCGTTTGAGACATGTCTTACGGCTTTTACGGCACCGGAATATGAAATTCCTGCATCtt < 1:5327121/68‑1 (MQ=255) cTTTTCTCAGCCGTATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:11553579/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCGATGTCATCCGGCTTTTTCCCCACCGCAATATGAAATTCCTGCATCtt < 1:11074662/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:28928010/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:4265435/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:14199290/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:21626144/68‑1 (MQ=255) cTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCtt < 1:25492464/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:7577916/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:20896041/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:1001335/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:31508074/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:14651371/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:22621841/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:16178056/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:1271844/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:3334135/68‑1 (MQ=255) ttttCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCttt < 1:22782933/68‑1 (MQ=255) tctcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATTAAATTGCTGCTTCTTTAtt > 1:12558356/1‑68 (MQ=255) tcAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTg > 1:3387285/1‑67 (MQ=255) cAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAc < 1:27745923/68‑1 (MQ=255) cAGACGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGAc < 1:32634349/68‑1 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:28639163/1‑68 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:4570056/1‑68 (MQ=255) gCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt > 1:16979825/1‑68 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCtt < 1:22969469/67‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCt < 1:15352648/66‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:33991114/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:32546128/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:3035131/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:8162577/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:24943895/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:22379127/68‑1 (MQ=255) cGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTc < 1:15740858/68‑1 (MQ=255) ggATGAGCCATGTGATCCGGCTTTTACCCCACCGCAATATGAAATTCCTTCATCTTTATTGACCTTcc < 1:21562280/68‑1 (MQ=255) gAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCAc > 1:12114508/1‑67 (MQ=255) ccATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc > 1:28173040/1‑68 (MQ=255) cATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc < 1:34303205/67‑1 (MQ=255) cATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGccc < 1:25606948/67‑1 (MQ=255) cATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCg > 1:7720181/1‑68 (MQ=255) tGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGc < 1:33077885/68‑1 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:5672568/1‑68 (MQ=255) gTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCg > 1:13837808/1‑68 (MQ=255) | CTATCAGCGACGGCCTGGCGCGCGTTAATCAGGCATTTTAATTCTTTTCTCAGCCGGATGAGCCATGTCATCCGGCTTTTACCCCACCGCAATATGAAATTCCTGCATCTTTATTGACCTTCCCACGCCCGGCG > CP009273/831626‑831759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |