| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 137 (0.330) | 22 (0.060) | 10/94 | NT | 14.7% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 141 (0.400) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACG < 1:34024136/66‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTG < 1:9229347/68‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:1127681/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:9603050/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:13660135/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:7746626/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:745052/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:28257502/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:6722264/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:5941365/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:24195702/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:28968820/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:33141795/67‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:25074660/67‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:25486469/67‑1 AGATTACGCGCATCAGAAAGGGAGAGGTGCGGCAGCGACATTCATGAATCCATCAATCGAACCCTGCC > 1:34375578/1‑68 AGATAACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:4103556/67‑1 GATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:33568019/1‑67 GATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:8665414/1‑67 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGCCTCCATCAATCGAACGCTGCCGC > 1:7242014/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:33771265/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:28769118/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:28439477/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:5436105/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:26951981/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:27841380/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:1769629/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:20077470/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:20131551/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:2261224/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:20402475/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:15673572/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGAAGCGACATTCATGACTCCAACAATCGAACGCTGCCGC > 1:25057269/1‑68 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:22523008/68‑1 ACGCGCATCAGCAAGGGATAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:14373379/68‑1 gaATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:12308982/65‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:33942805/67‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACACCATCAATCGAACGCTGCCGCACCTCT < 1:24482330/67‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACACCATCAATCGAACGCTGCCGCACCTCT < 1:2416146/67‑1 GCATCAGCAAGGGAGAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:31189323/67‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:3012011/67‑1 ATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:28157492/67‑1 ccGCAAGGGAGAGGGGCGGCAGCGACATTCATGACTCCATCAATCGACCGCTGCCGCACCTCTCCCTT < 1:17604889/66‑1 CAGCAAGGTAGAGGTGGGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:13435320/68‑1 CAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTT < 1:5446521/68‑1 GCAAGGGAGAGGTGCGGCAGCGACATGCATCACACCATCAATCCAACGCTGCCGCACCTCTCCCTTGC < 1:1162913/68‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:9660252/67‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:8045282/67‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:3861303/67‑1 GAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCACCCTTGCTGATGCG < 1:14205702/67‑1 GAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCGCCCTTGCTGATGCG < 1:15855809/67‑1 GGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:33435025/66‑1 GGTGCGGCAGCGACATTCATGACTCCATCAACCCAACGCGGCCGCACCTCTCCCTTGCTGATGCGC < 1:27297304/66‑1 cGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAA < 1:4362770/67‑1 GCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAAT < 1:24651525/68‑1 CATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGC < 1:25469666/68‑1 CAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGT < 1:9358718/68‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:1811151/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:22394377/67‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:10390133/68‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:25481329/68‑1 CGCACCTCTCCCATGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC < 1:13968138/68‑1 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964888‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCCGC > CP009273/964858‑964922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |