| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 194 (0.470) | 33 (0.080) +A |
15/110 | NT | 15.3% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 178 (0.430) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC > CP009273/1162078‑1162129 | TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCG > 1:7889349/1‑68TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCG > 1:27655927/1‑68 AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGG > 1:6522636/1‑68 AATTAACGGGGGTCACGTTGTCTACGCCAATCAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGT < 1:19521905/68‑1 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGA > 1:26590649/1‑66 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCTTCGGGTGTAGAA > 1:15574793/1‑67 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGA > 1:18581578/1‑66 GGGGTCTCGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGAGGGGTGTAGAAC > 1:31718721/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCTTCTGGTGTAGAAC > 1:30642753/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGGCGGGTCTAGAAa > 1:16047198/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCGTGGGGTAGAA > 1:25755523/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGCCGGGTGTTGAAC > 1:20035049/1‑67 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGAGTGGTGTTGAAa > 1:33587230/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGAGGGGTGTAGAAat > 1:3093834/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACTGGTCTAGAAa > 1:22004616/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAAC > 1:9847792/1‑67 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGCGTAGAACTCTCAGCa > 1:12264194/1‑66 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGGCTAGAAATCTCAGCTG > 1:22638899/1‑68 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTG > 1:15083354/1‑68 tgtCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:20582235/64‑1 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCGGGTGTAGAACTCTCAGCTGAATT > 1:575968/1‑68 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGCCTGGTGTAGAAATCTCCGCAGAAgt > 1:19107887/1‑66 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAA > 1:33864318/1‑54 ACTACGCCATTGAAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGG < 1:27891032/47‑1 CTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGGGGGGTGTTGAACTCTCCGCAGAAATG > 1:6557591/1‑68 TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGGCTGGGGTTGAACTCTCCGCTGAGTTG > 1:20151123/1‑67 TACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTGAATTGC > 1:34324040/1‑68 GCCATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCGGCGGGTGTAGAAATCTCCGCTCAAATGCACA > 1:11387371/1‑68 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTCTAGAACTCTCACCAGAAATGCACc > 1:12970149/1‑66 AAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGCTC > 1:12738858/1‑68 AAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTA > 1:26159855/1‑36 ATTGTGATTGTCGGCGGCGGGGCGACGGGGGTAGAACTCGCCGCTGAATTGCGCCACGCGGTCAAGC > 1:1896624/1‑67 GATTGTCGGCGGCGGGGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAAC > 1:23621475/1‑52 GATTGTCGGCGGCGGGGCGACGGGTGTTGAACTCTCCGCTGAATTGCCCAACGCGGTCAAGCAACTGC > 1:23847654/1‑68 ATTGTCGGCGGCGGAGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAc > 1:11487860/1‑62 | TTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161518‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC > CP009273/1162078‑1162129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |