| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 194 (0.470) | 33 (0.080) +A |
15/110 | NT | 15.3% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162078 = | 178 (0.430) | coding (538/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 244 total aligned reads displayed.
TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162012‑1162144 | ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:190559/1‑68 (MQ=255)ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:30628973/1‑68 (MQ=255)ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGgcgc > 1:5867144/1‑68 (MQ=255)ttCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGGGACCATTGCGATTGTCGGCGGCGgcgc > 1:1700074/1‑68 (MQ=255) ttaataaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcgggGCg > 1:27655927‑M2/66‑68 (MQ=255) ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg > 1:28458186/1‑67 (MQ=255) ccTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGcgcg > 1:21755987/1‑67 (MQ=255) aaatttaagggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggggcggcggg > 1:6522636‑M2/61‑68 (MQ=255) aattaacgggggtcacgttgtctacgccaatcaaaaagattgtgattgtcggcggcggcGCGACGGgt < 1:19521905‑M2/9‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:10068183/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:14244951/68‑1 (MQ=255) aaTACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgt < 1:26115461/68‑1 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt < 1:5131678/68‑1 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:4855762/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:28894162/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:3889725/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:33227178/1‑68 (MQ=255) tACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGgtgt > 1:33726345/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:15365666/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:6075738/1‑68 (MQ=255) aCTCCGCCAACCTGGGCGCGAAAGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:16845061/1‑68 (MQ=255) aCTACGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTa > 1:22428299/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:18683591/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGa > 1:9785688/1‑68 (MQ=255) tCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGAGGCGGCGGGACGGGTGTAGa > 1:14437698/1‑68 (MQ=255) gggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGa > 1:18581578‑M2/53‑66 (MQ=255) ggggtcacgttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGCCGGGTGTTGAAc > 1:20035049‑M2/52‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:22361251/1‑67 (MQ=255) gCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:2719248/1‑67 (MQ=255) ccAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAAc > 1:21394212/1‑66 (MQ=255) cAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAActc > 1:25607068/1‑67 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:12637518/68‑1 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:1729303/68‑1 (MQ=255) aCCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc < 1:20740976/68‑1 (MQ=255) ccTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:34435012/1‑67 (MQ=255) tGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTcc > 1:10719582/1‑65 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggcGCGACGGGGCTAGAAATCTCAGCTg > 1:22638899‑M2/44‑68 (MQ=255) gttgactacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGAACTCTCCGCTg > 1:15083354‑M2/44‑68 (MQ=255) gggCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTg > 1:7090203/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:27385175/1‑68 (MQ=255) cgcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAt > 1:2060552/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:2659414/1‑68 (MQ=255) gcgAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAAtt > 1:17980196/1‑68 (MQ=255) actacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGaa > 1:33864318‑M2/40‑54 (MQ=255) tacgccattgaaaaagattgtgattgtcggcggcggaGCGACGGGTGTAGAACTCTCCGCTGAATTGc > 1:34324040‑M2/38‑68 (MQ=255) gAAGGGAAAACTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGc < 1:10598815/68‑1 (MQ=255) aTGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGcac > 1:12260656/1‑68 (MQ=255) gccattgaaaaagattgtgattgtcggcggcggaGCGGCGGGTGTAGAAATCTCCGCTCAAATGcaca > 1:11387371‑M2/35‑68 (MQ=255) ccattgaaaaagattgtgattgtcggcggcggcGCGACGGGTCTAGAACTCTCACCAGAAATgcacc > 1:12970149‑M2/34‑66 (MQ=255) aGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:15701654/1‑68 (MQ=255) gTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCgg > 1:31501213/1‑67 (MQ=255) tGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:419583/68‑1 (MQ=255) aaaagattgtgattgtcggcggcggcGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGCTc > 1:12738858‑M2/27‑68 (MQ=255) gAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTc < 1:32805955/67‑1 (MQ=255) aaCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTGaa > 1:23850957/1‑68 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa < 1:5586852/67‑1 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:7868873/1‑67 (MQ=255) aCATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCaa > 1:1617617/1‑67 (MQ=255) attgtgattgtcggcggcgggGCGACGGGGGTAGAACTCGCCGCTGAATTGCGCCACGCGGTCAAGc > 1:1896624‑M2/22‑67 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:8631208/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:20182491/1‑68 (MQ=255) aTTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:29843535/1‑68 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa < 1:22928296/67‑1 (MQ=255) ttGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCa > 1:12149589/1‑67 (MQ=255) gCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACt < 1:466505/68‑1 (MQ=255) gattgtcggcggcgggGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAAc > 1:23621475‑M2/17‑52 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:24970161/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:27373340/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:24087284/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc > 1:6606072/1‑68 (MQ=255) gATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGc < 1:6694543/68‑1 (MQ=255) aTTGTCGGCGGCGGAGCGACTGGTGTAGAAATCTCCGCTCAGATGCACAAAGCGCTCCAGCAAcctc > 1:1324345/1‑64 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca < 1:30413121/68‑1 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:29446922/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:3114720/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGcaca > 1:25824798/1‑68 (MQ=255) tGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGGCAAGCAACTGcaca < 1:9612074/68‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:10246280/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:25176368/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:10288260/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:19611389/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:33465311/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:3182095/67‑1 (MQ=255) cggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGc < 1:32557009/67‑1 (MQ=255) gcggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAc > 1:26174077/1‑68 (MQ=255) cggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTa < 1:34866663/66‑1 (MQ=255) ggcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:15572011/67‑1 (MQ=255) ggcggcgCGACGGGTGTAGAACTCTACGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACg < 1:15812786/67‑1 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:30446728/1‑68 (MQ=255) gcggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt > 1:23558783/1‑68 (MQ=255) cggctCTACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:25367561/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCTGTCAAGCAACTGCACAGCTACGGt < 1:12314323/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:20427677/67‑1 (MQ=255) cggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGt < 1:8521303/67‑1 (MQ=255) ggcgCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGtt < 1:31719875/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:32970733/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:11494598/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:23264903/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:28389376/67‑1 (MQ=255) cgcgACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTAc < 1:29087323/67‑1 (MQ=255) | TTCCTGAAATACTCCGCCAACCTGGGCGCGAATGGCAAAGTGAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTACA > CP009273/1162012‑1162144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |