BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3375198 =	314 (0.750)	25 (0.070)	8/94	NT	9.4%	coding (1097/1368 nt)	degQ	serine endoprotease, periplasmic
*	?	CP009273	3375228 =	217 (0.620)	25 (0.070)	8/94	NT	9.4%	coding (1127/1368 nt)	degQ	serine endoprotease, periplasmic

Only 100 of 146 total aligned reads displayed.

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:30508874/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTC                                                                            >  1:31853031/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGGGATCATTTC                                                                            >  1:21694237/1‑68

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTCGCGTGATCATTTC                                                                            >  1:27567129/1‑68

 CTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                           >  1:27427106/1‑68

  TTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCA                                                                           >  1:33278618/1‑67

   TTGCCGCGATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGGTGGCGTGATCATTTCAGC                                                                         <  1:20158787/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGC                                                                         <  1:30790910/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:20117632/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:19433392/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:20479649/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:20638583/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:32851604/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:32315211/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:21499511/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:22765243/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:32298463/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:31888007/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:24194278/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:24586392/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:29187148/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:25533891/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:2747363/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:13116622/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:10343985/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:10288610/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:9563202/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:12011265/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:12462173/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:12523121/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:8843420/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:12838368/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:8817677/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:8525844/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:6162750/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:592515/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:15374735/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:15454322/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:34737226/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:3466896/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:33742192/68‑1

   TTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTACAGCGCTGGCGTGATCATTTCAGC                                                                         <  1:9282442/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:9667860/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:31394818/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:5178817/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:3661427/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:347040/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:20202640/68‑1

     GCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGC                                                                       <  1:22885911/68‑1

      CCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGC                                                                         >  1:26804487/1‑65

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:10382338/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:16985750/1‑68

       CGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTG                                                                     >  1:5083216/1‑68

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:14111077/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:24186235/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:2364497/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:20957697/68‑1

        GCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG                                                                    <  1:15389010/68‑1

          CATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                  <  1:33583964/68‑1

          CATCTTTTAGCTGACCATCGCGCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAA                                                                  <  1:23675759/68‑1

           ATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAG                                                                 <  1:29683945/68‑1

           ATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCGGGCGGGATCATTTCAGCGCTGGAAG                                                                 <  1:8547450/68‑1

             CTTTTCGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:24774762/68‑1

             CTTTTAGCTGACCATCGCTCACCGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:26241099/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:2957453/68‑1

             CTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:18963042/68‑1

             CTTTTAGCTCACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGT                                                               <  1:33897040/68‑1

                  cGCTGACCATCGCGCAACGTAGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:8183661/67‑1

                  AGCTGACCCTCGCTCAACGTTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:13642388/68‑1

                  AGCTGACCATCGCTCAACGTTGCCCCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:28397600/68‑1

                  AGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:13680648/68‑1

                  AGCGGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAAC                                                          <  1:6830446/68‑1

                   GCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCG                                                                        >  1:29975687/1‑53

                     TGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTT                                                       <  1:12527141/68‑1

                     TGACCATCGCGCAACGTGGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGT                                                        <  1:34533500/67‑1

                     TGACCAGCGCCCAACGTTGCACCTTCCCGCGCTGGCGGGATCATTTCAGCGCTGGAAGGTGCAACG                                                         <  1:25004757/66‑1

                        CCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAG                                                    <  1:13054735/68‑1

                                  cCGTTGCACCTTCCAGCGCGGCCGTGATCATTTCAGCGCTGGACGGTGCAACGTTGAGCGATGGTCAG                                          <  1:8081083/67‑1

                                  ACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCACCGCTGGAAGGTGCAACGTTGAGCGATGGTCAG                                          <  1:17256926/68‑1

                                   cgcTGCACCTTCCCGCGCTGGCGTGATCATTTCAGCGCGGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:28455890/65‑1

                                   CGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:26626785/68‑1

                                   CGTTGAACCTCCCACCGCCCGCGTGATCATTTCACCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:28547025/68‑1

                                   CGTTCCACCTTCCCGCGCTGGCGTCATCATAGCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGC                                         <  1:11136902/68‑1

                                    gtcGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCT                                        <  1:5921429/65‑1

                                               CAGCGCTGGCGTGATCATTTCAGCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCG                             <  1:29556990/68‑1

                                                                     GCGCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGA       >  1:6439705/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAATGGTATTAAAATCGAGGAAG     >  1:14493891/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:6467004/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     <  1:29682268/68‑1

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:7273465/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:6162238/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:29352209/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:24354778/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:31232610/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:21032981/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAG     >  1:9438514/1‑68

                                                                       GCTGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTAATAAAATCGATGAAG     <  1:7365527/68‑1

                                                                         TGGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGT    <  1:10978969/67‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  <  1:3767155/68‑1

                                                                          GGAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  <  1:15516369/68‑1

CCTTTGCCGCCATCTTTTAGCTGACCATCGCTCAACGTTGCACCTTCCAGCGCTGGCGTGATCATTTCAGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/3375273‑3375198

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgctggAAGGTGCAACGTTGAGCGATGGTCAGCTAAAAGATGGCGGCAAAGGTATTAAAATCGATGAAGTTG  >  CP009273/3375228‑3375293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.