| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556942 = | NA (NA) | 8 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 168 total aligned reads displayed.
TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 TCTGGCCTACAAGACCATGCAATTTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:2124146/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:19924396/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:25943894/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:19808173/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:32180814/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:26667515/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:8851798/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:7478850/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:21371055/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:3735895/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:629348/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:15646738/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:13556937/1‑68TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGAAGCGCA > 1:20085614/1‑68 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCAT < 1:20200803/68‑1 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:14549269/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:5277411/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:1581777/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:2024862/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:31030132/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:11202947/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:33213365/1‑67 CTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCA > 1:21212229/1‑67 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATa > 1:29038167/1‑67 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:1189347/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:30229500/1‑68 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC < 1:1619784/68‑1 TGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATC > 1:7347150/1‑68 GGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCA > 1:24197736/1‑68 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:20706050/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:27595773/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:22175325/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:25109136/1‑67 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:10219633/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:19105537/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG < 1:4605675/67‑1 CCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAG > 1:15083482/1‑67 CTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC < 1:22849363/68‑1 ccTAGGCCTGATAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCT < 1:30790267/66‑1 CGTAGGCCTGATAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCT < 1:12757835/68‑1 CGTACGCCTGATAAGCGTAGCGCATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCT < 1:9317440/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:9772732/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:9231771/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:9217259/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:27951088/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:34192282/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:33955743/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:33432371/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:32578645/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:32363694/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:31501831/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:31394650/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:15908675/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:18042122/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:18274922/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:12727343/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:20587399/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:12832778/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG < 1:11105969/68‑1 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:23914147/1‑68 TCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCAAGGTCTTGTAGGCCAGATAAGACGTTCACG > 1:3342392/1‑68 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:16591557/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:29272179/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:16917004/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:27460451/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:18602838/1‑67 GGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTC > 1:26143305/1‑67 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:13047248/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:6360060/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7457412/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:13296592/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7740744/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:16834013/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:779102/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:7884156/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:8255386/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:8349155/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:11755979/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:11559721/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:10524808/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:10080741/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:20663648/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:2492860/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:26966336/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:23160050/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:28161895/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:28516626/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:22368854/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:21026943/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:30756921/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:18599474/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:17976567/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:3312884/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:25784451/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > 1:34374352/1‑68 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:1610020/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:6218472/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:23355043/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGC < 1:474114/67‑1 CCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTAGCA > 1:15252122/1‑68 TCTGGCCTACAAGACCATGCAAATTCAATATATTGCATAAACCACGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3557015‑3556942‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAGGCCAGATAAGACGTTCACGTCGCA > CP009273/3556967‑3557033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |