| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3556942 = | NA (NA) | 8 (0.020) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 864 total aligned reads displayed.
GTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAG > CP009273/3556875‑3557009 | tgctacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:15252122‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:20982695‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:3087298‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:13047248‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:25921055‑M1/68‑68 (MQ=255)gtAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTg < 1:27216782/68‑1 (MQ=255) ttAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGa < 1:2111794/68‑1 (MQ=255) ttAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGa > 1:1217091/1‑68 (MQ=255) ttAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGa > 1:12794799/1‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:27951088‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:28288053‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:1594208‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:18274922‑M1/63‑68 (MQ=255) aCGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc < 1:24765403/68‑1 (MQ=255) aCGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc < 1:15544759/68‑1 (MQ=255) aCGTAAGGTGATCAGGGCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc < 1:11879023/68‑1 (MQ=255) cGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgcg < 1:530004/68‑1 (MQ=255) gTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc > 1:24208822/1‑66 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:33100324/68‑1 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:6557405/68‑1 (MQ=255) aGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc < 1:18792724/68‑1 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:8255253/1‑67 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:14291148/1‑67 (MQ=255) ggTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:3805775/1‑67 (MQ=255) gTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTAc > 1:22482198/1‑66 (MQ=255) gATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCt < 1:32552024/67‑1 (MQ=255) gATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCt < 1:4061724/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:27660204/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:18117080/67‑1 (MQ=255) tCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTa < 1:1843432/67‑1 (MQ=255) ggTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAg > 1:6940624/1‑68 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:33513392/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:7908932/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:9829695/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg > 1:20819769/1‑67 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg > 1:10857639/1‑67 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:16694690/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:10295262/67‑1 (MQ=255) tCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:10627896/67‑1 (MQ=255) cAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGcc < 1:22015955/68‑1 (MQ=255) aGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGcgt > 1:8612098/1‑66 (MQ=255) gATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATgc < 1:34453792/49‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAAGTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:23813019/1‑68 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:1110930/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:32218754/66‑1 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:14922082/1‑68 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:25631543/1‑68 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:30517816/1‑68 (MQ=255) tttCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACg > 1:14113784/1‑68 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:30004472/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:14644182/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:22193671/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:33371049/68‑1 (MQ=255) cAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTgg < 1:26368090/68‑1 (MQ=255) atgtGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt > 1:25083378/4‑68 (MQ=255) aTCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGtt > 1:11544772/1‑68 (MQ=255) cTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTa > 1:17783606/1‑68 (MQ=255) cTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTa > 1:31840196/1‑68 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:34099233/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:19720893/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:961236/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:21346963/68‑1 (MQ=255) tGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTAt < 1:20567967/68‑1 (MQ=255) ccTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCa > 1:9008946/1‑68 (MQ=255) cTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCaa < 1:24552879/68‑1 (MQ=255) gagaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAata < 1:6095879/68‑1 (MQ=255) taCTTATGACAAACACACAACCGCCTGATGCGCTACGCGTAGCAGGCCTACGTGGTTTATGCAatat < 1:4695671/66‑1 (MQ=17) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:26766480/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:1908177/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:22869866/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata > 1:29334208/1‑68 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:31433248/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:21604209/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:5052736/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:1002075/67‑1 (MQ=255) gaCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatat < 1:12374666/67‑1 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTTTCAGGCCTACGTGGTTTATGCAatatat > 1:9290663/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:25349286/1‑68 (MQ=255) aCTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat > 1:1721969/1‑68 (MQ=255) cTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatatat < 1:16953589/67‑1 (MQ=255) cTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAatata < 1:23417/66‑1 (MQ=255) gatgaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGa < 1:6311576/68‑1 (MQ=255) gaCAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAtt > 1:4876030/1‑68 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAttt < 1:7177818/67‑1 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAttt < 1:31170602/67‑1 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAAttt > 1:19476603/1‑67 (MQ=255) cAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTg < 1:7465589/68‑1 (MQ=255) aaaCACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGc < 1:13660452/68‑1 (MQ=255) aaaCACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGc < 1:13904654/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:5709629/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:7606215/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:28519827/68‑1 (MQ=255) caAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGt < 1:16174197/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:34831540/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:33850752/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:28952374/68‑1 (MQ=255) aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCtt < 1:16424337/68‑1 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTg > 1:1752483/1‑68 (MQ=255) aCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTg > 1:2302965/1‑68 (MQ=255) cTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGt > 1:2001373/1‑68 (MQ=255) | GTAAATTAACGTAAGGTGATCAGGTCAGATTTCAATCTGGCCTGAGACTGATGACAAACACAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGTTTATGCAATATATTGAATTTGCATGGTCTTGTAG > CP009273/3556875‑3557009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |