New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4156417 =	NA (NA)	7 (0.020)	4/112	NT	NA	intergenic (+204/‑170)	murI/rrsB	glutamate racemase/16S ribosomal RNA of rrnB operon
	?	CP009273	4197929 =	NA (NA)					intergenic (‑469/‑146)	purH/rrsE	fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon

TAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4156459‑4156417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  CP009273/4197929‑4197992                                                                                                             TAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCACTGCTCTTTAACAATTTATCAGA                                          <  1:13484707/67‑1    ATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGCACTGCTCTTTAACAATTTATCAGACAAT                                      <  1:15773586/68‑1                    GCCGCTTCGCTTTTTCTCAGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACT                         <  1:18269481/65‑1                              TTTTACTCAGCGGCACTCCTCTTAAACAATTTATCAGACAATCTGTGGGGGCACTCGAAGATACGGAT            <  1:18978469/68‑1                                      AGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC     <  1:6486088/67‑1                                      AGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAAC     <  1:25379435/67‑1                                      AGCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATT           <  1:31975201/61‑1                                       GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACG    >  1:28896837/1‑67                                       GCGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACG    >  1:2794935/1‑67                                        CGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:19046507/1‑68                                        CGGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:22926498/1‑68                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCTCTCGAAGATACGGATTCTTAAAGTC  >  1:30645080/1‑67                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:23681718/1‑67                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:34019697/67‑1                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:28418839/1‑67                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:26375704/1‑67                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  1:25961023/1‑67                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:18163158/67‑1                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:18163140/67‑1                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:13958006/67‑1                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:10535241/67‑1                                         GGCACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGT   <  1:13225929/66‑1                                         GGCACTGCTCTTTAACAATTAATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:5468160/67‑1                                         GGCACTACTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  <  1:25039375/67‑1                                                                                                             TAAATTGTTAAAGAGCAGTGCCGCTTCGCTTTTTCTCAGCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4156459‑4156417 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTAACGTC  >  CP009273/4197929‑4197992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.