| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4156417 = | NA (NA) | 7 (0.020) | 4/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
Only 100 of 619 total aligned reads displayed.
GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTA > CP009273/4197864‑4197987 | gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:25370218/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:15554944/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:27167217/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:5949236/68‑1 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct > 1:10027818/1‑68 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct > 1:7913710/1‑68 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct < 1:32068933/68‑1 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct > 1:26324612/1‑68 (MQ=255) ctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCttt > 1:7598553/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCATCTGCTCTTTAACaa > 1:11182223/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:6259681/1‑68 (MQ=255) agagGAAAGCGTAATAAACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:18459182/1‑68 (MQ=255) gAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:15014622/1‑68 (MQ=255) gAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:17026305/1‑68 (MQ=255) gAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:12767372/1‑68 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:31772820/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:4626137/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:32379937/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:24610327/1‑67 (MQ=255) aGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCa < 1:27959814/68‑1 (MQ=255) aGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCa > 1:14677308/1‑68 (MQ=255) gCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAg > 1:19496970/1‑68 (MQ=255) gTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGa < 1:29261610/67‑1 (MQ=255) gTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGa < 1:3454937/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:8959145/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:9558886/67‑1 (MQ=255) atatACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:26734803/68‑1 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:5064690/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:17227151/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:2567996/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:18168306/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:11368027/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:19329613/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:8029075/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:22971245/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:10696628/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCt < 1:18649893/68‑1 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCt < 1:19875160/68‑1 (MQ=255) taCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtg < 1:4542430/68‑1 (MQ=255) taCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtg < 1:22317933/68‑1 (MQ=255) taCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtg < 1:16816968/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt > 1:3050680/1‑68 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:1336901/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:26150595/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:11454564/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt > 1:27324385/1‑68 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg > 1:6808105/1‑68 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:16295434/68‑1 (MQ=255) gCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgt > 1:385262/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCATCTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:33861662/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:20821423/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:31890233/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:12205499/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:30182222/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:1187509/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:4765165/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:14506588/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:17569567/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:4265976/1‑68 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:27010607/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:10894920/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:25990954/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:18893614/1‑67 (MQ=255) cTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGc > 1:30859538/1‑67 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:14165723/68‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:1427602/68‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGGGGGCACt < 1:29414543/68‑1 (MQ=255) gACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCg < 1:29058041/67‑1 (MQ=255) gACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGa > 1:9638718/1‑68 (MQ=255) gACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGa > 1:9180746/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAAGTGCTCTTTAACAATTTATCAGCCAATCTGTGTGGGCACTCGaa > 1:15800769/1‑68 (MQ=17) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACATTCTGTGACGACACACGaa > 1:31372615/1‑68 (MQ=17) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCt > 1:23158066/1‑53 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:11651435/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:28855228/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:28211371/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:3481979/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:842725/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:5357972/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:7722606/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:10273659/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:28506427/1‑68 (MQ=255) gTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAt > 1:12520928/1‑68 (MQ=255) tGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGAt > 1:21385362/1‑67 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:7236585/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATAc > 1:20453802/1‑68 (MQ=255) gcTAGAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACgg > 1:24933077/1‑68 (MQ=255) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt < 1:33280333/68‑1 (MQ=39) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt < 1:20270613/68‑1 (MQ=39) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATTCGGag > 1:23542129/1‑66 (MQ=255) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:3105454/1‑67 (MQ=37) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:13909132/1‑67 (MQ=37) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:9751621/1‑67 (MQ=37) aaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:13121228/1‑66 (MQ=35) aaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTc < 1:33643570/68‑1 (MQ=35) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATGTGTGTGGGCACTCGAAGATACGGATTCt > 1:23896347/1‑68 (MQ=18) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:21677307/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:6524777/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:13719112/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:32752898/1‑68 (MQ=33) | GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTTA > CP009273/4197864‑4197987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |