| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 124 (0.300) | 9 (0.030) | 7/96 | NT | 5.7% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382434 | 189 (0.530) | noncoding (35/76 nt) | glyY | tRNA‑Gly | |||||
Only 100 of 238 total aligned reads displayed.
ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 | aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:31476187‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:21470542‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:25078590‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:29490427‑M1/68‑1 (MQ=255)aTGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTG < 1:11196414‑M1/68‑1 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:20150725‑M2/1‑63 (MQ=255) aaaTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:18978958‑M2/1‑63 (MQ=255) aaaGTACGTAAACAAAATTACGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:31919276‑M2/1‑63 (MQ=255) aTTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtc < 1:24732938‑M2/68‑8 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:27364621/68‑1 (MQ=255) cGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCgggg < 1:32813417/68‑1 (MQ=255) aaGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctc > 1:6400554‑M2/1‑54 (MQ=255) aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctcta < 1:26326130‑M1/68‑17 (MQ=255) aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctcta > 1:22084601‑M2/1‑53 (MQ=255) aGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:10240379/1‑68 (MQ=255) aTTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTc > 1:13933566/1‑68 (MQ=255) ttAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCg > 1:22462271/1‑68 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGCCCTTGCCAAGGTCGGGGTCGCGAGTTCGa > 1:27507969/1‑68 (MQ=255) tAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGa < 1:1660744/68‑1 (MQ=255) aaGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgag > 1:13186824‑M2/1‑44 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:4439465/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:32473174/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:3655171/1‑66 (MQ=255) gtagtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAg > 1:12551378/1‑66 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGCGTTCGAGtctc > 1:30224173/1‑68 (MQ=255) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:33563206/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:26189305/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:7518306/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:33769922/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:17337676/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtctc > 1:12451438/1‑68 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:26350815/67‑1 (MQ=39) agtaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGtct < 1:23984036/67‑1 (MQ=39) ctaCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg < 1:16864191/67‑1 (MQ=25) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCg < 1:13402939/66‑1 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:20653164/1‑68 (MQ=33) aCGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGtt > 1:6728642/1‑68 (MQ=33) cgGGAATAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattccc > 1:30736245‑M1/1‑33 (MQ=255) aTAGCTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccatctgagctattcccgcttggg > 1:31196127‑M1/1‑28 (MQ=255) cTCAGTTGGTAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtgg > 1:21442099‑M1/1‑24 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtacttcttaattttgct > 1:34417864‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgct > 1:27303562‑M1/1‑15 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGatag > 1:5331912/1‑65 (MQ=0) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTTaaaa > 1:20532229/1‑68 (MQ=14) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGatag > 1:23602902/1‑65 (MQ=1) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:25965173/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:32530093/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaa > 1:4794049/1‑68 (MQ=31) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATATGaaaa > 1:4094828/1‑68 (MQ=14) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGaaaat > 1:26742294/1‑67 (MQ=14) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTTTGAAAAGt > 1:145121/1‑68 (MQ=25) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAga > 1:32240402/1‑67 (MQ=18) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:3696454/1‑68 (MQ=35) gtaCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:23824511/64‑1 (MQ=25) gCACGTCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:8435607/66‑1 (MQ=25) gCACGACCTTGCCAAGGTCGTGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:21741259/66‑1 (MQ=25) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:34569902/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:12942084/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:6535976/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:3189116/66‑1 (MQ=35) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt < 1:29816466/66‑1 (MQ=35) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAATtgat > 1:32308570/1‑66 (MQ=9) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgat > 1:12119567/1‑66 (MQ=37) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGt > 1:27809240/1‑65 (MQ=35) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAACATTTGATAAGtgct > 1:978257/1‑67 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgct < 1:11583931/67‑1 (MQ=40) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgc < 1:28734186/66‑1 (MQ=39) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:20760763/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:880820/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:6205922/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:18334636/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:25788094/68‑1 (MQ=255) cGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGtgctgc < 1:14450396/68‑1 (MQ=255) gACCTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgccttacagcact < 1:15723950‑M1/68‑62 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaa > 1:2838630/1‑68 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgcgctattcccgcgtactacttaattttgctttcgtaattt > 1:25672224‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattctcgcgtactacttatttttgctttcgtaatat > 1:23817901‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtggtctgtgggtttccgcacttt > 1:15007152‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcttgggtgggctgtgccttacagcacttt < 1:2024210‑M1/68‑64 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:6085340‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:15353753‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:17136627‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:13179493‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:25857629‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaatt < 1:17832512‑M1/67‑63 (MQ=255) ccTTGgcaaggtcgtgctctaccaactgagctattaccgcttccgtggtctgtgcattacagcacttt > 1:25721999‑M1/1‑5 (MQ=255) ccTTGgcaaggtcgtgctcgaccaactgagctattcccgcgtactacttaattttgctttcgtaattt > 1:31312025‑M1/1‑5 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa < 1:31371696/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCaaa > 1:9033747/1‑67 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAg < 1:30380363/68‑1 (MQ=255) ttGgcaaggtcgtgctctaccaactgagctattcccgcgtactacttaattttgctttcgtaattttc < 1:22286674‑M1/68‑66 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:19588035/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:19990820/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:27665865/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:8083962/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:22728083/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:5153661/68‑1 (MQ=255) ttGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGc < 1:18127234/68‑1 (MQ=255) ttGCCAAGGGCGGGGTCGCGAGATCGAGTCTCGTTTCCCGCTCCAAAAATTGAAAAGTGCTCCAAAGc < 1:8539870/68‑1 (MQ=17) gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGcac > 1:14891196/1‑68 (MQ=255) | ATGCGAAAATTACGAAAGCAAAATTAAGTAGTACGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAATTTGAAAAGTGCTGCAAAGCAC > CP009273/4382143‑4382277 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |