| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4382210 | 124 (0.300) | 9 (0.030) | 7/96 | NT | 5.7% | noncoding (34/76 nt) | glyV | tRNA‑Gly |
| ? | CP009273 | = 4382434 | 189 (0.530) | noncoding (35/76 nt) | glyY | tRNA‑Gly | |||||
Only 100 of 233 total aligned reads displayed.
AAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAATATCC > CP009273/4382372‑4382499 | aaaGTGCTGTAATGCACAGACCACGGAAGCGGTAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:25721999‑M2/1‑63 (MQ=255)aaaGTGCTGTAAGGCACAGCCCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg < 1:2024210‑M2/68‑6 (MQ=255)aaaGTGCTGTAAGGCACAGACCACGCAAGCGGGAATAGCTCAGTTGGTCGAGCACGACCTTGCcaagg > 1:8153228‑M2/1‑63 (MQ=255)aaaGTGCGGAAACCCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaagg > 1:15007152‑M2/1‑63 (MQ=255) tcctgAAACGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgt > 1:16750668‑M2/3‑59 (MQ=255) gCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCggg > 1:31127266/1‑68 (MQ=40) gCTGTAAGGCACAGACCACCCAAGCGGGAATAGATCACTTGGTAGATCACGACCTTGCcaaggtctgg < 1:32122679‑M2/68‑11 (MQ=255) aaGTCACTGACCACCCAAGCGGGAATAGCTCAGTTGGTATAGCACGACCTTGCcaaggtcgtgctcta > 1:25819066‑M2/1‑53 (MQ=255) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGCCCTTGCCAAGGTCGGGGTcgc > 1:30725642/1‑68 (MQ=25) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:23617455/1‑68 (MQ=35) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:26090056/1‑68 (MQ=35) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:26429834/1‑68 (MQ=35) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:2792643/1‑68 (MQ=35) aaGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTcgc > 1:28428930/1‑68 (MQ=35) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:689953/1‑68 (MQ=31) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:1966438/1‑68 (MQ=31) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:14809808/1‑68 (MQ=31) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:7679505/1‑68 (MQ=31) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:1052602/1‑68 (MQ=31) ggCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGa > 1:32957125/1‑68 (MQ=31) ccaccCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactgag > 1:21442099‑M2/1‑43 (MQ=255) ccaccCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCcaaggtcgtgctctaccaactga > 1:31185446‑M2/1‑43 (MQ=255) tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 1:2267255/1‑68 (MQ=31) tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 1:5630118/1‑68 (MQ=31) tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 1:30502159/1‑68 (MQ=31) tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 1:33713930/1‑68 (MQ=31) tCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt > 1:3258054/1‑68 (MQ=31) gTTGGTAGAGCACGGCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAttct > 1:23671284/1‑68 (MQ=255) gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAtttt > 1:27965930/1‑66 (MQ=14) gTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAttct > 1:32852709/1‑68 (MQ=37) tGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAttct > 1:17792170/1‑66 (MQ=37) tGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAttattc > 1:12762545/1‑68 (MQ=25) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTGTtctc > 1:5439715/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:25540526/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:24777184/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:32150152/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:29995466/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:4230167/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:27099644/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:10093956/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:18396298/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:14224934/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:708138/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:16463810/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:13754550/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:6410687/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:33358726/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:18675642/1‑67 (MQ=255) tAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctc > 1:11429445/1‑67 (MQ=255) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctctc > 1:5211521/1‑68 (MQ=255) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctctc > 1:2010403/1‑68 (MQ=255) agagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTtctct < 1:32643441/67‑1 (MQ=255) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:5836343/68‑1 (MQ=255) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa > 1:32453941/1‑68 (MQ=255) gagCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATtatctga > 1:29528272/1‑66 (MQ=11) agCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCaa > 1:10550440/1‑68 (MQ=255) agCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:19035513/67‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCTCGCTCCAAATTCTTCTCTCaa < 1:24938318/67‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:21687625/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:30119188/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:15609430/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:33977444/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:61481/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:4575929/66‑1 (MQ=255) gCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCa < 1:204766/66‑1 (MQ=255) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTGTTCTATCaaat > 1:33886898/1‑66 (MQ=14) cACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATTATCTCAATa > 1:6432009/1‑68 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:3553786/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:30924040/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:23907311/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:23074025/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa > 1:19206123/1‑68 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:17627132/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:7606893/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:11599758/68‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATa < 1:8972925/67‑1 (MQ=255) aCGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATTCTATCTATaa > 1:12203433/1‑68 (MQ=14) aCGACCTTGCCAAGGGCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATa < 1:10333794/67‑1 (MQ=255) aCGACCTTGCCAAGCTCGGGGTCGCCAGTTCGAGTCTCCTTTCCCGCTCCAAATTCTTCTCTCAATaa < 1:25089704/68‑1 (MQ=18) gACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:17530443/68‑1 (MQ=255) gACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:9813070/68‑1 (MQ=255) gACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:14304348/68‑1 (MQ=255) gACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:15773746/68‑1 (MQ=255) gACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:26916631/68‑1 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAat > 1:34611615/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAat > 1:24387016/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAat > 1:31474800/1‑68 (MQ=255) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATTATATGAATAAAat > 1:17291512/1‑68 (MQ=14) aCCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTATTATATCAaaaaaaa > 1:21557337/1‑67 (MQ=14) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAAt < 1:4531446/50‑1 (MQ=32) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATaaaa < 1:16946453/66‑1 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatt > 1:25364245/1‑67 (MQ=255) ccTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAata < 1:21334444/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatat < 1:16876860/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatat < 1:360857/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatat < 1:14880578/68‑1 (MQ=255) cTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatat < 1:11229782/68‑1 (MQ=255) tGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAatat < 1:1203482/66‑1 (MQ=255) tGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAATATcc < 1:8338313/68‑1 (MQ=255) gCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAATATcc > 1:32759043/1‑67 (MQ=255) | AAAGTGCTGTAAGGCACAGACCACCCAAGCGGGAATAGCTCAGTTGGTAGAGCACGACCTTGCCAAGGTCGGGGTCGCGAGTTCGAGTCTCGTTTCCCGCTCCAAATTCTTCTCTCAATAAAATATCC > CP009273/4382372‑4382499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |