New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 4512275 =289 (0.690)25 (0.070) 11/92 NT 8.0% coding (1637/1968 nt) yjhG putative dehydratase
?CP009273 4512318 = 338 (0.990)coding (1594/1968 nt) yjhG putative dehydratase

Only 100 of 550 total aligned reads displayed.

TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342
                                                                   |                                                                   
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:23217878/68‑1 (MQ=255)
ttCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGc                                                                     <  1:6792789/68‑1 (MQ=255)
 aagaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    <  1:24556959‑M1/2‑1 (MQ=255)
  agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    >  1:24113409‑M1/66‑67 (MQ=255)
  agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcacc                                                                    >  1:19255574‑M1/66‑67 (MQ=255)
  agaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCg                                                                   <  1:155979‑M1/3‑1 (MQ=255)
   gaaacctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGa                                                                  <  1:33381558‑M1/4‑1 (MQ=255)
   aaTTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGa                                                                  <  1:32419653/68‑1 (MQ=255)
    aTTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGAt                                                                 <  1:33137068/68‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:25496643‑M1/7‑1 (MQ=255)
       cctaccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGc                                                               <  1:32957384‑M1/7‑1 (MQ=255)
         taccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCAcg                                                            >  1:27819048‑M1/59‑68 (MQ=255)
         taccaggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCAcg                                                            >  1:13461839‑M1/59‑68 (MQ=255)
          tCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:23026867/1‑68 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:10870538/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:20096724/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:29802895/68‑1 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCAcgc                                                           >  1:31292190/1‑67 (MQ=255)
           ccccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTGCTGGCCCCACATGGCCGATGCAcgcg                                                          <  1:8916935/68‑1 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACGTGGCCGATGCACGCGcc                                                        >  1:23589450/1‑68 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:4682099/68‑1 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        >  1:5214252/1‑68 (MQ=255)
             ccGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGcc                                                        <  1:28537237/68‑1 (MQ=255)
             aggttaccagtgccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCCCgcgc                                                         <  1:28682440‑M1/13‑1 (MQ=255)
              cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa                                                       <  1:8129708/68‑1 (MQ=255)
              cGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCa                                                       <  1:9742402/68‑1 (MQ=255)
               ggTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAg                                                      >  1:3208381/1‑68 (MQ=255)
                 tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGCTGCACGCGCCAGTa                                                    >  1:9242079/1‑68 (MQ=255)
                 tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGt                                                     <  1:25677992/67‑1 (MQ=255)
                 tGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTa                                                    >  1:22329047/1‑68 (MQ=255)
                  gCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTa                                                    <  1:21111187/67‑1 (MQ=255)
                  gCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTa                                                    <  1:14970897/67‑1 (MQ=255)
                      aaTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:23321761/1‑68 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:34870107/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:9154106/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:17425562/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAAc                                               >  1:5458791/1‑67 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACg                                              <  1:4405938/68‑1 (MQ=255)
                       aTTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCCCTGCACGCGCCAGTAGAAAc                                               >  1:9500196/1‑67 (MQ=255)
                        gccctgaagcatctgtcatacggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACg                                              <  1:26166118‑M1/24‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:7272230/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGcc                                            <  1:6548283/68‑1 (MQ=255)
                         ttACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGc                                             >  1:33931608/1‑67 (MQ=255)
                           aCCGATGGGGCCTCCGGCCAGCGCTTATGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCg                                          >  1:24972779/1‑68 (MQ=255)
                            ccGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCga                                         >  1:20438108/1‑68 (MQ=255)
                             cGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgag                                        <  1:17655099/68‑1 (MQ=255)
                              gATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCgaga                                       <  1:12937286/68‑1 (MQ=255)
                                tGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGaaa                                     <  1:12741390/68‑1 (MQ=255)
                                tGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGaa                                      >  1:494336/1‑67 (MQ=255)
                                 ggggCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAAc                                    <  1:18429452/68‑1 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGGGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:23863695/1‑68 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:2219607/1‑68 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:29587808/1‑68 (MQ=255)
                                     ccTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGc                                >  1:21490902/1‑68 (MQ=255)
                                         cGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCg                            >  1:13653959/1‑68 (MQ=255)
                                         cGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCg                            >  1:11947651/1‑68 (MQ=255)
                                          ggCCAGCGCTTCTGGCCCCACATGGCCGCTGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCgg                           >  1:33582330/1‑68 (MQ=255)
                                           gCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt                          >  1:29124841/1‑68 (MQ=255)
                                            ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt                          <  1:20699143/67‑1 (MQ=255)
                                            ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTg                         >  1:11675612/1‑68 (MQ=255)
                                                 gcTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTaa                    <  1:13096173/68‑1 (MQ=255)
                                                    tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 <  1:16138854/68‑1 (MQ=255)
                                                    tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 >  1:30798759/1‑68 (MQ=255)
                                                    tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa                 <  1:22758669/68‑1 (MQ=255)
                                                     tgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCCTCGGTGATTAACGaa                <  1:34647094‑M1/54‑1 (MQ=255)
                                                     cTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa                <  1:14222901/68‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:32717333/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:19429827/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa             <  1:28292126/67‑1 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:21827922/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:7884940/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:30163512/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:28759031/1‑68 (MQ=255)
                                                         ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt            >  1:33754920/1‑68 (MQ=255)
                                                          cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg           <  1:8795647/68‑1 (MQ=255)
                                                            cacaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCt         <  1:3164211/68‑1 (MQ=255)
                                                            cacaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCt         <  1:7503661/68‑1 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:14460995/1‑67 (MQ=255)
                                                              caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt        >  1:26727106/1‑67 (MQ=255)
                                                               aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa       >  1:15206495/1‑67 (MQ=255)
                                                               aTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTa       >  1:11378840/1‑67 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:27021627/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:12291862/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:19707566/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:171231/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:2593881/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:31078078/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:16648716/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:10008532/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:10417893/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:601600/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:27286633/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:16494680/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:18814101/68‑1 (MQ=255)
                                                                tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc     <  1:19139272/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAACCGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:18007478‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:27628095‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt   >  1:34194937‑M1/1‑67 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:8544018‑M1/68‑1 (MQ=255)
                                                                   CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa  <  1:828044‑M1/68‑1 (MQ=255)
                                                                   |                                                                   
TTCAATTAAATCCCCGGTGCGTAATTTACCGATGGGGCCTCCGGCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTA  >  CP009273/4512208‑4512342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.