| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4512275 = | 289 (0.690) | 25 (0.070) | 11/92 | NT | 8.0% | coding (1637/1968 nt) | yjhG | putative dehydratase |
| ? | CP009273 | 4512318 = | 338 (0.990) | coding (1594/1968 nt) | yjhG | putative dehydratase | |||||
Only 100 of 588 total aligned reads displayed.
GCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTT > CP009273/4512251‑4512383 | ccAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGt < 1:6625218/67‑1 (MQ=255) ggtaagcatgtttcgttaatcaCCGATGCACGCGCCAGTAGAAACGCCCGAGATACGTGCCTCGGTGa < 1:30853159‑M1/46‑1 (MQ=255) ttCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACg < 1:9724028/68‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa < 1:6239087/68‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa < 1:22758669/68‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGa < 1:28208437/68‑1 (MQ=255) tCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCCAGAAACGTGCATCGGTGATTAACGa < 1:23417729/68‑1 (MQ=255) cTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGaa < 1:14222901/68‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAACCAt > 1:15447626/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACa < 1:13362713/67‑1 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:8796124/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:12433209/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:13079263/1‑68 (MQ=255) ccccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACAt > 1:28759031/1‑68 (MQ=255) cgttaatcaccgatgcacgtttctcgggcgtttctactggcgcgtgcatcggTGATTAACGAAACATg < 1:20831511‑M2/16‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:5274038/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:4755301/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:33255639/68‑1 (MQ=255) cccACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATg < 1:26165471/68‑1 (MQ=255) cacaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACGTGCt > 1:23817640/1‑68 (MQ=255) cacaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCt < 1:7503661/68‑1 (MQ=255) acaTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:765265/1‑68 (MQ=255) caTGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCtt > 1:19176358/1‑67 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:10008532/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:2593881/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:26850012/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:5958436/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:21792749/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:27752776/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:31137941/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:34739463/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:22233385/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:16643195/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:17911563/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:12779136/68‑1 (MQ=255) tGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTAcc < 1:16933229/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:25620217‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGt > 1:7885890‑M1/1‑67 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:7189440‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:20562425‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:8285533‑M1/68‑1 (MQ=255) CCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa < 1:29942003‑M1/68‑1 (MQ=255) CGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTa > 1:3146747‑M1/1‑67 (MQ=255) CGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTAt < 1:3028010‑M1/68‑1 (MQ=255) GATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATg < 1:10895549‑M1/68‑1 (MQ=255) GATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGGGATTAACGAAACATGCTTACCGTAt < 1:26592317‑M1/67‑1 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGa > 1:24693561‑M1/1‑67 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGAc < 1:14358092‑M1/68‑1 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGAc < 1:28483448‑M1/68‑1 (MQ=255) TGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGAc > 1:4355020‑M1/1‑68 (MQ=255) GCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACa < 1:14507616‑M1/68‑1 (MQ=255) CACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAg < 1:3069383‑M1/68‑1 (MQ=255) CACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAg < 1:19870137‑M1/68‑1 (MQ=255) CGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:8585672‑M1/1‑68 (MQ=255) cgcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:3830945/1‑66 (MQ=255) cgcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGAt > 1:10621364/1‑66 (MQ=255) ttctcgggggtttctcctggcccgtgcctcggTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:23247032‑M2/36‑1 (MQ=255) ttctcgggcgtttctactggcgcgtgcatcggTGATAAACGAAACATGCTTACCGTATGACAGATGCt < 1:14984990‑M2/36‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:8138722/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:31724322/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:148300/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:16006754/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:17178254/68‑1 (MQ=255) gcCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCt < 1:17579477/68‑1 (MQ=255) cAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTc < 1:9123095/68‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:34116502/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:33605068/67‑1 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg > 1:1178948/1‑67 (MQ=255) aGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAgg < 1:18047768/67‑1 (MQ=255) aGAAACGCCAGAGAAACGTGAATCGGTGATTAACGAAACATGCTTACCGTATGACAGATTCTTCAgg < 1:23068335/67‑1 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGCCAGATGCTTCAGGGc > 1:32495295/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:24388045/1‑67 (MQ=255) aaaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:18536946/1‑67 (MQ=255) aaCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGc > 1:12099547/1‑66 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:28067706/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:27246503/68‑1 (MQ=255) aCGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACt < 1:25398704/68‑1 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:4939165/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:25762753/1‑68 (MQ=255) cGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTg > 1:18833596/1‑68 (MQ=255) gagaAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAAc < 1:16142872/68‑1 (MQ=255) gaAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAAcc < 1:16438844/67‑1 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCt < 1:19341636/66‑1 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg > 1:28895321/1‑68 (MQ=255) aaCGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTgg > 1:27496896/1‑68 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:32957384‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:3211249‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAgg < 1:29553965‑M2/60‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGt < 1:1024850‑M2/61‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGt < 1:11383909‑M2/61‑1 (MQ=255) gcatcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGt < 1:34522703‑M2/61‑1 (MQ=255) tcggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttc < 1:33381558‑M2/64‑1 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:19655303‑M2/4‑68 (MQ=255) cggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct < 1:21201352‑M2/65‑1 (MQ=255) ggTGATTAACGCAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGAttct > 1:9256927‑M2/3‑67 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttctt < 1:33878198‑M2/66‑1 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:11618398‑M2/3‑67 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:13733089‑M2/3‑67 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:20103827‑M2/3‑67 (MQ=255) ggTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTttct > 1:24113409‑M2/3‑67 (MQ=255) | GCCAGCGCTTCTGGCCCCACATGGCCGATGCACGCGCCAGTAGAAACGCCCGAGAAACGTGCATCGGTGATTAACGAAACATGCTTACCGTATGACAGATGCTTCAGGGCACTGGTAACCTGGTAGGTTTCTT > CP009273/4512251‑4512383 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |