| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 331 (0.790) | 14 (0.040) | 6/88 | NT | 5.2% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 254 (0.780) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 619 total aligned reads displayed.
CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 | cATTTGGTTTCAATATTATGAAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:31989659‑M1/68‑1 (MQ=255) aTTTGGTTTCAATAATATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:19558191/68‑1 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:31571976/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:3886659/1‑68 (MQ=255) ggTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCg > 1:13283708/1‑68 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCggg < 1:23192989/67‑1 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCggg < 1:21043902/67‑1 (MQ=255) cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt < 1:20667397/68‑1 (MQ=255) cAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt < 1:15815488/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:25236884/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:30098233/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:8673383/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCATGCGGGCAtt < 1:25592292/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTc < 1:32588685/68‑1 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:19015562/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:24502868/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:19815715/1‑68 (MQ=255) tagtatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:15129738/4‑68 (MQ=255) attatGCAAAATCGCACCACTGTCAACCATTACCTTTAACTCTGTCAGCCGCCCTTCCGGGCAATCt > 1:7369167/1‑67 (MQ=255) ttatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTAc < 1:27584424/68‑1 (MQ=255) tatGCAAAATCGCACCACAGTCATCAATTACCTTTTACACTGTCAGCCGCCCTTGCGGCCAATCTACg > 1:1876192/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:29905454/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:17621685/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:28922309/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:6238020/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:2439709/68‑1 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:10033317/67‑1 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:5982173/67‑1 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:945928/67‑1 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:29722909‑M2/68‑2 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:7106652‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:5277295‑M2/1‑61 (MQ=255) cacaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:20341461‑M2/65‑6 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg < 1:11330488‑M2/68‑10 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGACCATTCgggcggctg < 1:8000448‑M2/68‑10 (MQ=255) aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac < 1:3754809‑M2/68‑12 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca > 1:7662932‑M2/1‑54 (MQ=255) aTCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAAcc < 1:10391932/68‑1 (MQ=255) aTCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAAcc < 1:10697949/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:16835486/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:21998756/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:33326301/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:2477919/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:15365159/1‑68 (MQ=255) tCCATTACGGTTTCCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:25950551/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCgaatggccgtagaatgcccgcaagggcggcggacagagta > 1:23689607‑M1/1‑28 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaaggggggctgacagagta > 1:4446049‑M1/1‑28 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:5151881/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:29363605/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:18506538/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:14604303/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:8332030/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaa > 1:12677957‑M1/1‑26 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:19392192/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:1732342/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:8943486‑M2/1‑47 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:16299054/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:13729375/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:16524803/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:30226120/1‑68 (MQ=255) cGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgt > 1:32477120‑M1/1‑22 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:16077487/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:29604192/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:34750134/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:28024219/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:28628570/1‑68 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:6782550/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:17067751/68‑1 (MQ=255) ttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGtt < 1:27147002/68‑1 (MQ=255) aCTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatgga > 1:19100311‑M1/1‑16 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:6431250/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa < 1:31148265/68‑1 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:12022586/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:21364365/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:30835981/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:22272369/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:22735147/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:26784077/1‑68 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:11692690‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:4596047‑M1/68‑57 (MQ=255) gTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgact < 1:31722810‑M1/68‑58 (MQ=255) GTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGAAAACCGTTTAAGCCGTTTAAAACg < 1:18273981‑M1/68‑1 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:565526‑M1/68‑60 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:691969‑M1/68‑60 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:26376875‑M1/67‑1 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCAATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:34461367‑M1/67‑1 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:31283750‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:32995593‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:2186759‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:34151907‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgacggtgg > 1:12229634‑M1/1‑7 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:33784078‑M1/68‑1 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:21577119‑M1/1‑67 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:13104323‑M1/1‑4 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:4354234‑M1/1‑4 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:30450208‑M1/67‑1 (MQ=255) CCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa > 1:15697074‑M1/1‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:292332‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:32816798‑M1/68‑68 (MQ=255) CTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAc > 1:14446465‑M1/1‑68 (MQ=255) | CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |