| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 331 (0.790) | 14 (0.040) | 6/88 | NT | 5.2% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 254 (0.780) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 481 total aligned reads displayed.
ATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCA > CP009273/4548087‑4548220 | aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:32816798‑M2/68‑2 (MQ=255)aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:25738492‑M2/68‑2 (MQ=255) cGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgg < 1:31971955‑M2/67‑3 (MQ=255) aaggaacgtttgaaacggcttaaacggtTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGggcg < 1:28295398‑M1/40‑1 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:5277295‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:19774488‑M2/66‑6 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:18922144‑M2/66‑6 (MQ=255) ccacAGTCATCCATTACGTTTAACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:26599365‑M2/1‑61 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg < 1:16208463‑M2/68‑10 (MQ=255) aGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgac < 1:31682591‑M2/68‑12 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:6227567‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:19028465‑M2/68‑13 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:28644984/1‑67 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:33326301/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:8497901/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:33601918/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:34792523/68‑1 (MQ=255) tCCATTACGGTTTCCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:25950551/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:22244755/1‑64 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:29363605/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:20910699/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:8940043/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:32535314/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:1045350/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt < 1:11993190/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:13502740/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGCCAACCGttt > 1:9234948/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:12763526/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:7348170/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:21858267/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:34528338‑M2/1‑47 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:16456900/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:30226120/1‑68 (MQ=255) aCGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:1157939/1‑67 (MQ=255) aCGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:27269615/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:21697923/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:21310223/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:27619657/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:29604192/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGGTTAAGcc > 1:17694392/1‑68 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgtaat > 1:17083794‑M2/1‑42 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:6782550/68‑1 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGCCAACCGTTTAAGCCGTTTc > 1:19415239/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:28899089/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:10341972/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:6431250/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:34310296/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:17394442/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:12226080/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa < 1:31148265/68‑1 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:30835981/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:29977930/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:5027979/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:18372262/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:31352523/1‑68 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:15615057‑M1/67‑1 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:2366270‑M1/67‑1 (MQ=255) GCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGtt < 1:14586006‑M1/66‑1 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:15789046‑M1/68‑1 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:3298172‑M1/68‑1 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:15179176‑M1/68‑1 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:18684764‑M1/68‑1 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTcc > 1:13179953‑M1/1‑66 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:231722‑M1/1‑67 (MQ=255) tCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:4504592‑M1/66‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:3756850‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:30450208‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:26891525‑M1/67‑1 (MQ=255) CCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa > 1:11036519‑M1/1‑68 (MQ=255) CTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAc > 1:14446465‑M1/1‑68 (MQ=255) tGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGc > 1:26305720/1‑68 (MQ=255) gggCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg > 1:24608943/1‑67 (MQ=255) gggCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg > 1:6942610/1‑67 (MQ=255) gggCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg > 1:5709070/1‑67 (MQ=255) gggCATTCTACGTCCATTCGGGCGGCTCACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAg > 1:25264007/1‑67 (MQ=255) gCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGc < 1:18781270/67‑1 (MQ=255) gCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGc < 1:30081017/67‑1 (MQ=255) gCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGc < 1:16589476/67‑1 (MQ=255) tCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTcc < 1:24029494/51‑1 (MQ=255) tACGTCCATTCGGGCGGCTGCCAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCg > 1:21473894/1‑68 (MQ=255) aCGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGt < 1:20555667/68‑1 (MQ=255) aCGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGt < 1:24818494/68‑1 (MQ=255) cGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTc < 1:10017259/68‑1 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:14145399/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:7715970/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:7851681/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:9736680/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:4323464/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:4033979/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:16021443/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:34150125/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:33932478/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:18148650/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:1923867/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:29768115/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:21967421/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:22387268/1‑68 (MQ=255) tCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt > 1:24464254/1‑68 (MQ=255) ccATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCtt < 1:20300159/67‑1 (MQ=255) ttCGGGCGGATGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGa > 1:22879194/1‑67 (MQ=255) | ATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCACGCAGGCTTTGCCGTCTTTGACCA > CP009273/4548087‑4548220 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |