| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 298 (0.710) | 277 (1.090) +CGTTTTTTTGGATGGAGGAATT |
36/68 | NT | 53.3% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 502 (1.200) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 838 total aligned reads displayed.
TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 | tgtgTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAg > 1:9439889/1‑68 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaatcgGGt < 1:21563026‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:25752651‑M1/3‑1 (MQ=255) cttgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGt < 1:26658681‑M1/3‑1 (MQ=255) gtTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGt < 1:7689657/67‑1 (MQ=255) ttttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTAt > 1:2257211/1‑68 (MQ=255) ttttGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTAt > 1:22804652/1‑68 (MQ=255) tgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTAt < 1:19108457‑M1/5‑1 (MQ=255) tgccccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTAt < 1:19999784‑M1/5‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATgg > 1:2083559‑M1/61‑67 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:28510003‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:29305222‑M1/8‑1 (MQ=255) cccctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGga < 1:1019838‑M1/8‑1 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:29933589/1‑68 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:32487201/1‑68 (MQ=255) ggCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgag > 1:12066621/1‑68 (MQ=255) gCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGgaga > 1:27339256/1‑68 (MQ=255) cctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:34717150‑M1/10‑1 (MQ=255) cctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGgaga < 1:416840‑M1/10‑1 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:27119367‑M1/58‑68 (MQ=255) ctgcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGaa > 1:1641665‑M1/58‑68 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:32674308/67‑1 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:33604030/67‑1 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:20365364/67‑1 (MQ=255) aGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGaa < 1:5027919/67‑1 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:9677835‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:24632499‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:24305017‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc < 1:33959198‑M1/13‑1 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:385144‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:4920604‑M1/56‑68 (MQ=255) gcccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAAc > 1:7332118‑M1/56‑68 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAAc < 1:26433677/66‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:31057112/67‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:22300587/67‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACa < 1:10848180/67‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAg < 1:18664223/68‑1 (MQ=255) gcCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAg < 1:23391113/68‑1 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:10033714‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:4394576‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:32261065‑M1/54‑67 (MQ=255) ccacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACa > 1:17959805‑M1/54‑67 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:6527157‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:1741592‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:15839619‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:11176196‑M1/53‑68 (MQ=255) cacttcaaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGt > 1:6024945‑M1/53‑68 (MQ=255) cAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGt < 1:11455815/67‑1 (MQ=255) cAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGt < 1:27449173/67‑1 (MQ=255) cAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGt < 1:1421761/67‑1 (MQ=255) caaaaaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTagaga > 1:33184689‑M1/48‑68 (MQ=255) cTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTg > 1:17196787/1‑68 (MQ=255) aaagcgcgatttttcttcatgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGtt < 1:32066400‑M1/24‑1 (MQ=255) ttCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGc > 1:28237521/1‑68 (MQ=255) aaTACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATa > 1:30388694/1‑68 (MQ=255) cccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:25042567/1‑68 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:29147686/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:23225900/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:6968089/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:23752265/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:5577384/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:31689438/1‑67 (MQ=255) ccGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGACTTGCTATaaaaa > 1:16933543/1‑67 (MQ=255) gcCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa < 1:20725577/68‑1 (MQ=255) cccGAGACCCGCACGCGTCGACGTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg > 1:8831230/1‑68 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg < 1:1259208/68‑1 (MQ=255) ccGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAg < 1:5155942/67‑1 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:15424964‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:5778462‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:6367479‑M1/27‑68 (MQ=255) catgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAgg > 1:8694497‑M1/27‑68 (MQ=255) atgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt > 1:28800860‑M1/26‑68 (MQ=255) tgaattcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa < 1:19465408‑M1/44‑1 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:14652668‑M1/22‑68 (MQ=255) attcctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:1042252‑M1/22‑68 (MQ=255) cccGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGa > 1:21929757/1‑67 (MQ=255) cGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:16657289/68‑1 (MQ=255) cGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:34531280/68‑1 (MQ=255) gCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg < 1:8424780/68‑1 (MQ=255) ctccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:19694781‑M1/18‑68 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:14451524‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:3536235‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:16128003‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:28105713‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:13991142‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:32924335‑M1/50‑1 (MQ=255) tccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:29722920‑M1/50‑1 (MQ=255) ccatccaaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:8132859‑M1/16‑68 (MQ=255) aCGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCt > 1:2781460/1‑68 (MQ=255) caaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAACGCGTCAGGTAGGATCCGCTAATCt > 1:15139570‑M1/11‑68 (MQ=255) caaaaaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt > 1:30755667‑M1/11‑68 (MQ=255) ccTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg > 1:25381706/1‑68 (MQ=255) aaaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg < 1:31388250‑M1/62‑1 (MQ=255) cTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg < 1:21331663/68‑1 (MQ=255) aaacgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 1:34203205‑M1/6‑68 (MQ=255) gCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGAt < 1:13727138/68‑1 (MQ=255) cgGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:17659323‑M1/3‑68 (MQ=255) ggTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaa > 1:1337539/1‑68 (MQ=255) ggTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaa > 1:18389182/1‑68 (MQ=255) ggTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaa > 1:9018018/1‑68 (MQ=255) | TGTGTTTTGGCAGCGCCAGGTTGGCTTCTAATACCCGGCGCCCGAGACCCGCACGCGTCGACCTGCAGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAA > CP009273/66493‑66627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |