| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 298 (0.710) | 277 (1.090) +CGTTTTTTTGGATGGAGGAATT |
36/68 | NT | 53.3% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 502 (1.200) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 1045 total aligned reads displayed.
TTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAA > CP009273/3509207‑3509340 | ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGa > 1:17443605‑M2/1‑66 (MQ=255) ttAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCt < 1:3369541/68‑1 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:8882294/68‑1 (MQ=255) aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:10995596/68‑1 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:34822341‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:13270227‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:20333908‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta > 1:21788534/1‑68 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta < 1:34674993/68‑1 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGacta > 1:7033710/1‑68 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACCTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:29773058‑M2/67‑7 (MQ=255) atcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaact > 1:31073911/1‑68 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat > 1:7436022‑M2/1‑57 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaacta < 1:22339359/68‑1 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaacta < 1:5186825/68‑1 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaacta < 1:21401864/68‑1 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaacta < 1:24083316/68‑1 (MQ=255) taaaGCAGGGGATACTTGCCACCTGCCCACTTCAAAAAATCGCGATTTTTCTTCATGCTGactaacta < 1:12805343/66‑1 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat < 1:6580707‑M2/67‑12 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGActaactaa > 1:14411441/1‑68 (MQ=255) caAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGActaactaa > 1:32502848/1‑68 (MQ=255) aaGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAt < 1:4950678/68‑1 (MQ=255) gCAGGGTATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:29639131‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:28708241‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:30153401‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGCCTAACTAAtt > 1:26820845/1‑67 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:177156/1‑67 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:5469473/1‑67 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:8073556/1‑67 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:11508049/1‑67 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGAGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:26145306/1‑67 (MQ=255) cAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaa < 1:29967976‑M2/68‑17 (MQ=255) gggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTaca > 1:4680276/1‑66 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:18297782/1‑67 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:86362/1‑67 (MQ=255) aTACTTGCCCCCTGCCCCCTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:24576748/1‑66 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:9306732/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:4098185/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:3796844/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:7668009/1‑66 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCt > 1:6344266/1‑66 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTCTCTTCATGCTGACTAACTAATTACACCtt < 1:3232903/67‑1 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt > 1:34396231‑M2/1‑43 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTcc > 1:5766874/1‑68 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTcc > 1:26389447/1‑68 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:32090882‑M2/68‑28 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:18030182/1‑67 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:28162026‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGc < 1:25529614/68‑1 (MQ=255) cccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgg < 1:19211372‑M2/68‑30 (MQ=255) cccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgg < 1:2716778‑M2/68‑30 (MQ=255) cccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:12294/1‑65 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGGTTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:11130806‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:31512858‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:10232224‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:13506495‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:23219859‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgg > 1:2083559‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:15348823/1‑64 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:21241359/1‑64 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:15754865‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:20631580‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:22678408‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtgtg > 1:29197854/1‑68 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:34059337‑M2/1‑35 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:9677835‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGgag > 1:30695677/1‑68 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGgag > 1:14644127/1‑68 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGgag > 1:15937310/1‑68 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGgaga > 1:28457679/1‑68 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTTTTCATGaattcccccatccaaaaaaacgggtatggagaaaca > 1:23628661‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:10033714‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:13957561‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:15073432‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:24806136‑M2/1‑31 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:3298033‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:6024945‑M2/1‑30 (MQ=255) aCTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTACTTACACCTTCTCCGGCTGTGGAGAAAg < 1:23416560/68‑1 (MQ=255) aCTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAg < 1:11924241/68‑1 (MQ=255) cTACAAAAAAGCGCGATTTTTCTTCATGaattccaccaaccaaaaaaacgggaatggagaaacagtag < 1:17208888‑M2/68‑41 (MQ=255) tCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCt > 1:31691872/1‑67 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTcc < 1:4299363/68‑1 (MQ=255) aaaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAATCTCCGAc < 1:18537821/68‑1 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:16763550‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:27504656‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:28958799‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:16207286/1‑68 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:24350534/1‑68 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:32690401/1‑68 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:33340948/1‑68 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:220922‑M2/1‑10 (MQ=255) tttCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAgcgc < 1:25175767/68‑1 (MQ=255) tgtcttcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAgcgc < 1:25806894/66‑1 (MQ=255) ttcttcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCt < 1:19935340/68‑1 (MQ=255) ttcttcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCt < 1:27881715/68‑1 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:10659756‑M2/1‑5 (MQ=255) tcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAg < 1:18809420/68‑1 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:8339174‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:16491936‑M2/1‑4 (MQ=255) tGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcaggta < 1:19465408‑M2/68‑67 (MQ=255) | TTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCAA > CP009273/3509207‑3509340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |