| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776472 | 550 (1.320) | 78 (0.280) | 8/76 | NT | 27.3% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 2514688 = | 43 (0.150) | noncoding (416/1345 nt) | IS186 | repeat region | |||||
Only 100 of 979 total aligned reads displayed.
GTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGC > CP009273/776405‑776539 | gtgggataTCGTTGCGTCAGAAACGGCGCGTCGGGAGAGCGAAGCGAGTCATCCTGCACGACCCACCA < 1:15459591‑M1/65‑1 (MQ=255) aGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCcaccac < 1:4384434/67‑1 (MQ=37) aGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACt < 1:26115322/68‑1 (MQ=39) aGGATAACGTTGCGTCAGAAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCcaccac < 1:15956248/67‑1 (MQ=255) ggATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTa > 1:9467702/1‑68 (MQ=40) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAAt > 1:12424678/1‑68 (MQ=255) aTAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAAt > 1:28603266/1‑68 (MQ=255) aaCGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGCAGCGAGTCATCCTGCACGACCCACCACTAATg > 1:30597075/1‑67 (MQ=255) aagTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGAc < 1:12984667/66‑1 (MQ=255) aCGTTGCGTCAGCATCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGAc < 1:18451460/68‑1 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:3799602/1‑68 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:3090396/1‑68 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:30113363/1‑68 (MQ=255) gTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACgg > 1:28877960/1‑68 (MQ=255) gTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTTATGACgg > 1:31341118/1‑68 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgcc < 1:14338220‑M1/68‑16 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt > 1:4696260/1‑68 (MQ=255) gTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGt < 1:17026877/68‑1 (MQ=255) aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCgg < 1:17755936/66‑1 (MQ=255) aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTg < 1:3447712/68‑1 (MQ=255) aaCGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTg < 1:976122/68‑1 (MQ=255) cGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGa < 1:5887212/68‑1 (MQ=255) cccGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATCACGGTGGGTTCGGAGGaaaa > 1:33631819/1‑66 (MQ=18) cGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:7430162/68‑1 (MQ=255) gTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAagtag < 1:25437174/67‑1 (MQ=255) aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGttt > 1:4981154/1‑68 (MQ=255) aGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGttt < 1:21919626/68‑1 (MQ=255) gggCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgctttttt > 1:26478284‑M1/1‑36 (MQ=255) gggCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgctttttt > 1:3028075‑M1/1‑36 (MQ=255) ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgctttttt > 1:10005229‑M1/1‑35 (MQ=255) ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTGTTAAAGGGGGGGGCGGTGGAAGTAGTTTgt > 1:20680500/1‑68 (MQ=14) ggCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt > 1:28197959/1‑68 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:26776530/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:33927380/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:127392/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:12055026/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:29236782/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:14889231/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:32571639/67‑1 (MQ=255) gcgagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgt < 1:17280939/67‑1 (MQ=255) gagcgaAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTgtagt < 1:12173697/68‑1 (MQ=255) cgaagcgaGTCATCCTGCACGACCCACCACTAATGAAGGGTGGTTCGGAGGAATTAGTTAGTAGTAt > 1:8488796/1‑67 (MQ=21) gaGTCATCCTGCACGACCCCCCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:23381758/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:20096926/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:19714030/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:18985535/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:8918307/66‑1 (MQ=255) gaGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAgc < 1:27572247/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:24845117/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAg < 1:2782467/66‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGt < 1:715598/67‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGt < 1:14591702/67‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTa < 1:24382881/68‑1 (MQ=255) cATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTa < 1:2287032/68‑1 (MQ=255) aTCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaa > 1:31790635‑M1/1‑18 (MQ=255) aTCCTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaa > 1:5349397‑M1/1‑18 (MQ=255) ccTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaaga > 1:28414697‑M1/1‑16 (MQ=255) ccTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaaga < 1:29483519‑M1/68‑53 (MQ=255) ccTGCACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgataatcaaaga > 1:25743967‑M1/1‑16 (MQ=255) ccTGCACGACCCACCACTATTGAAGGTGGGGACGGTGGAAGTAGTTTGGAGTATCCAGCGCAGTATCg > 1:792349/1‑68 (MQ=37) ccTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCg > 1:3523534/1‑68 (MQ=255) ccTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCg > 1:10898499/1‑68 (MQ=255) cTGCACGACCCACCACTATTTACGCTGGGTGCGGTGGAAGTATGTTGTAGTAACCAGCGCAGTATCgg > 1:32100125/1‑68 (MQ=255) cACGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcg > 1:29669892‑M1/1‑12 (MQ=255) aCGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcga > 1:27162478‑M1/1‑11 (MQ=255) aCGACCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcga > 1:15305622‑M1/1‑11 (MQ=255) aCGACCCACCACTATTGACGGTGGGGTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:1135540/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:33306119/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:33002867/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:66423/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa > 1:1814900/1‑68 (MQ=255) aCGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGa < 1:16459827/68‑1 (MQ=255) aCGACCCACCAATATTTACGGTTGGGTCGGAGTAAGAAGTTTGAAGTATCCAGCGCAGTATGGGGtta > 1:13789634/1‑66 (MQ=255) aCCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaa > 1:6914395‑M1/1‑8 (MQ=255) aCCCACCAatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaa > 1:21545620‑M1/1‑8 (MQ=255) aCCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATc > 1:1614238/1‑47 (MQ=255) aCCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTa > 1:1517787/1‑68 (MQ=255) ccaccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctg < 1:21274434‑M1/68‑63 (MQ=255) accacTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTc < 1:25175742/68‑1 (MQ=255) accaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgca < 1:8251791‑M1/68‑65 (MQ=255) ccaatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgca > 1:17600565‑M1/1‑3 (MQ=255) cacTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAg < 1:7695749/68‑1 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:10374074/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:19279825/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:203186/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:20864633/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:5585559/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:22401710/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:403094/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCa > 1:23983349/1‑66 (MQ=255) acTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGc < 1:22614115/68‑1 (MQ=255) acTAATGAAGGTGGGGTCTGTGGAAGTAGTATGAAGAATCCAGCGCAGTATCGGGTGATAAGCTCa > 1:1327490/1‑66 (MQ=21) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:11718195‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:22245551‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:23697643‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:24566682‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:18747053‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:34169313‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatactcaaagattcgaacctgcagca > 1:14034811‑M1/1‑1 (MQ=255) aatgtaaaaaagcgccctaaaggcgcttttttactatctgcgatacgcaaagattcgaacctgcagca > 1:6231179‑M1/1‑1 (MQ=255) | GTAGGATAACGTTGCGTCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCACTAATGACGGTGGGTTCGGTGGAAGTAGTTTGTAGTATCCAGCGCAGTATCGGGTGATTAGCTCAGC > CP009273/776405‑776539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |