| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776472 | 550 (1.320) | 78 (0.280) | 8/76 | NT | 27.3% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 2514688 = | 43 (0.150) | noncoding (416/1345 nt) | IS186 | repeat region | |||||
Only 100 of 343 total aligned reads displayed.
CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > CP009273/2514622‑2514755 | aggataacgttgcgacagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaAt < 1:28135562‑M2/2‑1 (MQ=255) ataacgttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaattat > 1:3663908‑M2/64‑65 (MQ=255) ataacgttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaatctt > 1:20964817‑M2/64‑65 (MQ=255) ataacgttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaatatt > 1:14113520‑M2/64‑65 (MQ=255) gttgcgtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaATATtaaa > 1:5210501‑M2/59‑66 (MQ=255) gtcagcaacggcccgtagggcgagcgaagcgagtcatcctgcacgaccccccaCTGTAAAAAggcgg > 1:8072210‑M2/54‑66 (MQ=255) acggcccgtagggcgagcgaagcgagtcatcctgcacgacccaccaATCTTAAAAAGAGCCCTAAAgg > 1:32498299‑M2/47‑68 (MQ=255) agggcgagtgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:2231183‑M2/38‑68 (MQ=255) agggcgagggaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt < 1:6351631‑M2/31‑1 (MQ=255) agggcgagcgaagcgagtcatcctgcccgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:27984922‑M2/38‑68 (MQ=255) agggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:9774203‑M2/38‑68 (MQ=255) agggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:24827260‑M2/38‑68 (MQ=255) agggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:2013662‑M2/38‑68 (MQ=255) agggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:1365437‑M2/38‑68 (MQ=255) gggcgagcgcagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:13882435‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:5447044‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:14839293‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:13017720‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:18856339‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:6940900‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:17683778‑M2/37‑67 (MQ=255) gggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:30267690‑M2/37‑67 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:24581202‑M2/36‑66 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:10005229‑M2/36‑66 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:12743905‑M2/36‑66 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:29004197‑M2/36‑66 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:5618094‑M2/36‑66 (MQ=255) ggcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCtttttt > 1:21733635‑M2/36‑66 (MQ=255) gcgagcgaagcgagtcatcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTAc < 1:4700515‑M2/33‑1 (MQ=255) ggTCGCAGGTTCGACTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:3150916/68‑1 (MQ=25) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:30418976/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:23995801/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:20619046/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGAAAAAAAGCGCCCTAAACGCGCTTTTTTACTAt < 1:32085303/68‑1 (MQ=255) ggTCGCAGGATCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTAt < 1:33583728/68‑1 (MQ=25) tCGCAGGTTCGAATCCTGCACGCCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTa > 1:4899947/1‑65 (MQ=25) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCt < 1:25611615/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCt < 1:448293/67‑1 (MQ=35) cGCAGGTTCGAATCCCGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCt < 1:25817039/67‑1 (MQ=25) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGc < 1:5080526/68‑1 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGc > 1:18415712/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGc < 1:1858828/68‑1 (MQ=35) gCAGGATCGAATCCTGCACGACCCACCAATGTAAAAACGCGCCCTACAGGCGCTTTTTTACTATCTGc < 1:25876435/68‑1 (MQ=11) aGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACattggtgg > 1:26492948‑M2/1‑59 (MQ=255) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATAc < 1:8871616/67‑1 (MQ=35) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCt < 1:2759094‑M2/26‑1 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa > 1:30924474‑M2/19‑68 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa > 1:18136960‑M2/19‑68 (MQ=255) atcctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCaaa > 1:33899860‑M2/19‑68 (MQ=255) tcctgcacgacccaccaATGTAAAAAATCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAg > 1:23400163‑M2/18‑68 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa < 1:30793403‑M2/52‑1 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa > 1:1184161‑M2/17‑68 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa > 1:28414697‑M2/17‑68 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa < 1:2806087‑M2/52‑1 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa > 1:19719977‑M2/17‑68 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa < 1:204762‑M2/52‑1 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa > 1:21532012‑M2/17‑68 (MQ=255) cctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGa > 1:23725215‑M2/17‑68 (MQ=255) ctgcacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGAt < 1:16071544‑M2/53‑1 (MQ=255) cacgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCg > 1:29669892‑M2/13‑68 (MQ=255) acgacccaccaATTTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 1:23005435‑M2/12‑68 (MQ=255) acgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 1:34697582‑M2/12‑68 (MQ=255) acgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 1:32889377‑M2/12‑68 (MQ=255) acgacccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGa > 1:14650306‑M2/12‑68 (MQ=255) acccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaa > 1:7812467‑M2/9‑66 (MQ=255) cccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCt < 1:19478967‑M2/61‑1 (MQ=255) ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGaaccgg > 1:15442098‑M2/7‑66 (MQ=255) ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTg < 1:29527142‑M2/62‑1 (MQ=255) accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca < 1:34476359‑M2/64‑1 (MQ=255) accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca < 1:8251791‑M2/64‑1 (MQ=255) ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgca > 1:17600565‑M2/4‑67 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAGCCTgcagca > 1:15077461‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgtagca > 1:1287217‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgctgca > 1:11665664‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgccgca > 1:7504023‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:7280789‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:12453643‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:12246778‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:22457424‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:10858257‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:9540310‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:10135494‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:28566055‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:22245551‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:22672018‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:24420964‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:18931495‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:26938365‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:27206631‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:18747053‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:3810335‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:31883328‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:16521846‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:33360022‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:34347807‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTgcagca > 1:1518596‑M2/2‑68 (MQ=255) aATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGACTCGAACCTgcagca > 1:11373928‑M2/2‑68 (MQ=255) aTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag < 1:17265550/68‑1 (MQ=35) aTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag < 1:31703640/68‑1 (MQ=35) aTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGcagcag < 1:8450860/68‑1 (MQ=35) | CTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTACTATCTGCGATACTCAAAGATTCGAACCTGCAGCAG > CP009273/2514622‑2514755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |