| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 776704 | 486 (1.170) | 65 (0.160) +AAC |
4/106 | NT | 12.4% | intergenic (+26/‑121) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | = 777108 | NA (NA) | noncoding (76/76 nt) | lysQ | tRNA‑Lys | |||||
Only 100 of 673 total aligned reads displayed.
TAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776638‑776771 | tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAg < 1:14646224/68‑1 (MQ=255) aaTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGc < 1:3704519/68‑1 (MQ=255) tCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGt > 1:21183394/1‑68 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGaa < 1:14955930/68‑1 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGaa < 1:9485051/68‑1 (MQ=255) ttGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAg < 1:13936995/68‑1 (MQ=255) tGGTCTAAGTTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:12843509/68‑1 (MQ=17) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:32342719/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:34533814/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:16965915/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:30074047/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:8112775/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:25288075/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:11644664/68‑1 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAgg < 1:11429453/68‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACg < 1:14202743/67‑1 (MQ=255) aGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACg < 1:2827510/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTgcg < 1:4335253/68‑1 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGc > 1:12605783/1‑68 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGc < 1:20415590/68‑1 (MQ=255) tCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGc < 1:2201355/68‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAATGATAACGTTGCGCCAGCAACgg < 1:7057825/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:13331508/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:10841687/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:22977917/67‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg > 1:18789205/1‑67 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGc < 1:33197210/68‑1 (MQ=255) aCGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCAAGCAACgg > 1:40505/1‑67 (MQ=255) aCGACCCACCAGTTTTAACACCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:23330892/67‑1 (MQ=255) aCGACCCACCAGTTTTAAAATCAAACTCAGATGATAAGCTTGAAGGATAACGTTGCTCCAGCAAAgg > 1:23713303/1‑67 (MQ=18) aCGACCCACCAATTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACgg < 1:24978315/67‑1 (MQ=255) ctaCCCACACGTTTTAACATCAAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:29358583/66‑1 (MQ=14) cGACCCACCATTCTAAAATTCGCACTCCGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:29573255/68‑1 (MQ=14) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:33808416/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:27001551/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:32890791/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:19084774/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:111143/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:15879556/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:16217839/68‑1 (MQ=255) cGACCCACCAGTTTTAACATCAAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:25823691/68‑1 (MQ=255) cGACCCACCAGTTTTAAAATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:3411077/68‑1 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:19422830/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg > 1:11976501/1‑68 (MQ=255) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGACAGCAACGGCCCg > 1:4732484/1‑68 (MQ=255) cccACCAGTTTTAACATCTAACACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGcc < 1:19999808/65‑1 (MQ=255) cccACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCg < 1:34803010/67‑1 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:2403957/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:25652785/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:9130077/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:26316597/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:6270898/1‑68 (MQ=255) aGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGgcg > 1:10007390/1‑68 (MQ=255) aaCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaa < 1:7524602/68‑1 (MQ=255) aaCATCAAACACAGATGTTAAGCGTGAAGTATAACGTTGCGCCAGAAACGGCCCGTAGGGCGagcgaa < 1:5743927/68‑1 (MQ=14) aCATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaa > 1:7254230/1‑67 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagc > 1:18327643/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagc > 1:2078171/1‑68 (MQ=255) cATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagc > 1:30544274/1‑68 (MQ=255) tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:8280642/68‑1 (MQ=255) tCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:28749481/68‑1 (MQ=255) tCAAACTCACATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGagcgaagcga < 1:12146086/68‑1 (MQ=255) ccTCAGATGTTAAGCGACACGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa < 1:24324941/67‑1 (MQ=14) aCTCAGATGTTAAGCGTGAAGGATAACGTGGCGCCAGCAACGGCCCG‑AGGGCGAGCGAAGCGAGTCAt < 1:10534990/68‑1 (MQ=14) cacAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:5984676/66‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCa > 1:15559476/1‑67 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:16525963/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:17803226/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:19654169/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:3136894/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:5316390/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:29735053/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:22643788/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:2908655/68‑1 (MQ=255) cTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCAt < 1:26473611/68‑1 (MQ=255) tttatgtTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgc < 1:21448505‑M1/63‑57 (MQ=255) ttttGTAAAGCGTGAAGTAAAACGTTGCGACAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:32728227/65‑1 (MQ=11) tatGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:32141145‑M1/67‑61 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:1602525‑M1/1‑7 (MQ=255) aTGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta > 1:28046241‑M1/1‑7 (MQ=255) aTGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATACTGc > 1:31931189/1‑68 (MQ=255) tGTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacc < 1:267125‑M1/68‑63 (MQ=255) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:20936959/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:17577506/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:6554911/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCt < 1:6713264/65‑1 (MQ=40) tGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGc > 1:30216689/1‑67 (MQ=40) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctacca < 1:10237018‑M1/68‑64 (MQ=255) gTTAAaactggtgggtcgtgcaggattcgaacctgcgaacaattgattaaaagtcaactgctctacca > 1:26005544‑M1/1‑5 (MQ=255) gTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCAc > 1:2774024/1‑68 (MQ=40) ttAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctcta < 1:33614269‑M1/64‑61 (MQ=255) tAAaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaa < 1:17128966‑M1/67‑65 (MQ=255) tAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGa < 1:16745000/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:5080898/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:34354736/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:30862434/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:27453112/68‑1 (MQ=40) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc < 1:1428266/68‑1 (MQ=40) aaactggtgggtcgtgcaggattcgaacctgcgaccaattgattaaaagtcaactgctctaccaactg < 1:8537105‑M1/68‑68 (MQ=255) aGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:24601672/1‑67 (MQ=40) | TAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACC > CP009273/776638‑776771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |