| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 777093 | 90 (0.220) | 69 (0.190) +TTTGAGT |
3/98 | NT | 46.7% | noncoding (61/76 nt) | lysQ | tRNA‑Lys |
| ? | CP009273 | = 2514886 | NA (NA) | noncoding (614/1345 nt) | IS186 | repeat region | |||||
Only 100 of 217 total aligned reads displayed.
GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 | ggaaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:34341580/66‑1 (MQ=25)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:1005358/68‑1 (MQ=39)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:2392248/68‑1 (MQ=39)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:28753925/68‑1 (MQ=39)gCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:4867017/68‑1 (MQ=39)ccAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCt < 1:21854292/67‑1 (MQ=37) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:16473953/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:17702537/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:31313110/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:33221080/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:15472074/1‑68 (MQ=35) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:15102185/1‑68 (MQ=35) aGGGGTCGTTAGCTCAGTTGGTAGCGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:5791871/1‑67 (MQ=18) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:2453194/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:20070739/1‑67 (MQ=33) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGc > 1:18048222/1‑67 (MQ=33) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:19135012/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:24665576/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:2403268/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:25334558/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:27948653/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:19002739/1‑68 (MQ=31) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc > 1:13022289/1‑68 (MQ=31) tttAATCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagcaaaaaatcgcgtttatggc > 1:26931033‑M1/1‑28 (MQ=255) tttAATCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggc > 1:12488074‑M1/1‑28 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgctttt > 1:14249592‑M1/1‑24 (MQ=255) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:33829718/1‑68 (MQ=35) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:290227/1‑68 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:6008783/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:7848299/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:1715402/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:15672509/68‑1 (MQ=35) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:13385930/68‑1 (MQ=35) cctCGCAAGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTAt < 1:25222154/66‑1 (MQ=255) tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTa > 1:11942970/1‑65 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:28569487/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:13175972/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:19228836/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:16180843/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCt < 1:14335740/67‑1 (MQ=35) cGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGCCGCTTTTTTGCTATCt < 1:20433697/67‑1 (MQ=25) gCAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtg > 1:30603597‑M1/1‑13 (MQ=255) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTgg > 1:31105514/1‑67 (MQ=25) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:6589158/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:21134054/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:27055175/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc > 1:3762953/1‑68 (MQ=35) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGc < 1:14363871/68‑1 (MQ=35) cAGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgg > 1:33319045‑M1/1‑12 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:2137149‑M1/1‑11 (MQ=255) aGGTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggg > 1:27596944‑M1/1‑11 (MQ=255) ggTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:30989327‑M1/68‑59 (MQ=255) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:10110751/1‑68 (MQ=35) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:15921102/1‑68 (MQ=35) gTTCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtc > 1:2360410‑M1/1‑9 (MQ=255) ttCGTATCtttgagaatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:30495917‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:15777620‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:10774051‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcg > 1:15815158‑M1/1‑8 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:11443827‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:33551762‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:3868927‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:12664552‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:8248409‑M1/66‑59 (MQ=255) ttCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggt < 1:9038000‑M1/66‑59 (MQ=255) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:7240291/1‑66 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:28964557/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:7921541/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt > 1:34755056/1‑66 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:15590172/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGAt < 1:883557/66‑1 (MQ=35) ttCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATa < 1:12381011/67‑1 (MQ=35) tCGAATCttttagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:10183162‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:32762901‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:21014424‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgt < 1:27658659‑M1/68‑62 (MQ=255) tCGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtggggcgt < 1:32239163‑M1/68‑62 (MQ=255) tCGAATCCTGCACGACCCACCAATGTACAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:22431720/67‑1 (MQ=255) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:6951505/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:19186563/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:30407353/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:15251475/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:29381954/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:2289162/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATAc < 1:29310398/67‑1 (MQ=35) tCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACt < 1:2815002/68‑1 (MQ=35) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:22776563‑M1/68‑63 (MQ=255) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:18229088‑M1/68‑63 (MQ=255) cGAATCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:16307534‑M1/68‑63 (MQ=255) cGAATCtttgagaatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtg < 1:20250698‑M1/68‑63 (MQ=255) aTCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcag > 1:6476950‑M1/1‑3 (MQ=255) tCtttgagtatcgcatatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:23113249‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgtttttttacattggtgggtcgtgcagg < 1:21919243‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:26001026‑M1/1‑2 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:27045867‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg < 1:2437243‑M1/68‑67 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:6351114‑M1/1‑2 (MQ=255) tCtttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagg > 1:14622621‑M1/1‑2 (MQ=255) ctttgagtatcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:2640148‑M1/68‑68 (MQ=255) ctttgagtagcgcagatagcaaaaaagcgcctttagggcgcttttttacattggtgggtcgtgcagga < 1:21483226‑M1/68‑68 (MQ=255) | GCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGA > CP009273/777028‑777160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |