BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 777093	90 (0.220)	69 (0.190) +TTTGAGT	3/98	NT	46.7%	noncoding (61/76 nt)	lysQ	tRNA‑Lys
*	?	CP009273	= 2514886	NA (NA)	69 (0.190) +TTTGAGT	3/98	NT	46.7%	noncoding (614/1345 nt)	IS186	repeat region

Only 100 of 573 total aligned reads displayed.

GCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT  >  CP009273/2514819‑2514953

     tCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCg                                                                >  1:7878246/1‑68 (MQ=255)

       aTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa                                                              >  1:24840354/1‑68 (MQ=255)

       aTCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaa                                                              >  1:33420611/1‑68 (MQ=255)

        tCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGaaa                                                             >  1:3309381/1‑68 (MQ=255)

         ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAAt                                                            <  1:18895446/68‑1 (MQ=255)

         ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAAt                                                            >  1:7126237/1‑68 (MQ=255)

         ccTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAAt                                                            >  1:2840316/1‑68 (MQ=255)

           tGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          <  1:15455340/68‑1 (MQ=255)

            gCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGc                                                         <  1:19796349/68‑1 (MQ=255)

            gCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGc                                                         <  1:1787299/68‑1 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:21649223/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:21097176/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:25858177/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:27567500/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:13564237/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:901957/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:1827367/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:11405156/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:10922260/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:19096806/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          >  1:4210414/1‑65 (MQ=255)

              aCGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGcat                                                       >  1:13023204/1‑66 (MQ=255)

               cGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTg                                                      >  1:17532557/1‑68 (MQ=255)

                gACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGa                                                     <  1:12174611/68‑1 (MQ=255)

                 aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    >  1:33542801/1‑68 (MQ=255)

                 aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    >  1:6810878/1‑68 (MQ=255)

                 aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    >  1:24255080/1‑68 (MQ=255)

                 aCCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGAt                                                    >  1:1064188/1‑68 (MQ=255)

                   ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                  <  1:31105031/68‑1 (MQ=255)

                   ccaccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgc                                                  <  1:22550309/68‑1 (MQ=255)

                     accaATGTAAAAAATCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:16070296/68‑1 (MQ=255)

                     accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:23916065/68‑1 (MQ=255)

                     accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:29422906/68‑1 (MQ=255)

                     accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:25416253/68‑1 (MQ=255)

                     accaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATgcgc                                                <  1:9296680/68‑1 (MQ=255)

                      ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt                                               >  1:31835461/1‑68 (MQ=255)

                      ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt                                               >  1:11504565/1‑68 (MQ=255)

                      ccaATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCt                                               >  1:1076430/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGTAATTGCCTGATGCGCTTc                                             <  1:8768590/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCtt                                              >  1:26175349/1‑67 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:25698629/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:25183671/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:3035764/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:10009533/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:22213397/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:11830534/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:14451861/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:7501833/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:16824547/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:654377/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:5957461/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             >  1:33927799/1‑68 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTc                                             <  1:22857032/68‑1 (MQ=255)

                        aaTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATCGCCTGATGCGCTTc                                             >  1:4766720/1‑68 (MQ=255)

                         aTGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGTTTTGCGAAATTGCCTGATGCGCTTc                                             >  1:34269517/1‑67 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc                                           <  1:3906463/68‑1 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc                                           <  1:17229253/68‑1 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc                                           <  1:16525261/68‑1 (MQ=255)

                          tGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCAc                                           <  1:24608610/68‑1 (MQ=255)

                           gTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTg                                                          <  1:8298402/52‑1 (MQ=255)

                           gTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACt                                          >  1:28270550/1‑68 (MQ=255)

                             aaaaaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTa                                        >  1:30715377/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:32604775/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:10385410/1‑68 (MQ=255)

                                aaaGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCa                                     >  1:27087025/1‑68 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    >  1:29920078/1‑67 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    >  1:32268052/1‑67 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAg                                    >  1:6326202/1‑67 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:6070071/68‑1 (MQ=255)

                                  aGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGa                                   <  1:13798491/68‑1 (MQ=255)

                                     gcCCTAACGTCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGCTGCGCTTCACTTAGCAGacta                                <  1:4415194/68‑1 (MQ=37)

                                     gcCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGact                                 <  1:21957742/67‑1 (MQ=255)

                                       ccTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGactact                              >  1:18593624/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACt                                          >  1:17735238/1‑50 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:19228838/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTcc                        >  1:12455742/1‑68 (MQ=255)

                                             ggCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTAGTTcc                        >  1:23805826/1‑68 (MQ=255)

                                               cgcTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCg                       >  1:34801129/1‑67 (MQ=255)

                                                   tttttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAAt                  <  1:12782449/68‑1 (MQ=255)

                                                   tttttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAAt                  <  1:27816156/68‑1 (MQ=255)

                                                    ttttGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAAtt                 <  1:5106374/68‑1 (MQ=255)

                                                          tATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAAtt                 >  1:1942764/1‑62 (MQ=255)

                                                          tATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtc           <  1:29282863/68‑1 (MQ=255)

                                                           aTCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtct          <  1:28965004/68‑1 (MQ=255)

                                                           aTCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtct          <  1:767754/68‑1 (MQ=255)

                                                           aTCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGtct          <  1:26631389/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:20255461/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:20731646/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:26407043/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:31564280/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:13199618/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:15061546/68‑1 (MQ=255)

                                                              tGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcct       <  1:14162681/68‑1 (MQ=255)

                                                               gCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTctcctc      >  1:23323884/1‑68 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:5715858/67‑1 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:8480672/67‑1 (MQ=255)

                                                                 gATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:3621632/67‑1 (MQ=255)

                                                                 gATTCGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCa     <  1:15654565/67‑1 (MQ=255)

                                                                   tttGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCAcc   <  1:9773142/67‑1 (MQ=255)

                                                                   tttGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCt  <  1:15297224/68‑1 (MQ=255)

GCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATTTGCGAAATTGCCTGATGCGCTTCACTTAGCAGACTACTATTTCCGGCAATTCCTGTCTCCTCACCT  >  CP009273/2514819‑2514953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.