| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 910549 = | 93 (0.220) | 6 (0.020) | 3/98 | NT | 8.2% | intergenic (‑236/+259) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910582 = | 53 (0.150) | intergenic (‑269/+226) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
Only 100 of 326 total aligned reads displayed.
GTTGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC > CP009273/910482‑910616 | gTTGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAg > 1:355167/1‑68 (MQ=37) cgggctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcgg < 1:9108350‑M1/2‑1 (MQ=255) tggtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAgg > 1:25825146/1‑67 (MQ=35) tgctggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAgg > 1:23630132/4‑67 (MQ=25) gggctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcggg > 1:33958559‑M1/66‑68 (MQ=255) gggctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcggg > 1:22789309‑M1/66‑68 (MQ=255) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:26321990/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:4538789/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:11995253/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCCGAGGgc > 1:27852642/1‑67 (MQ=25) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:29006066‑M1/4‑1 (MQ=255) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:13783933‑M1/4‑1 (MQ=255) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:17733337‑M1/4‑1 (MQ=255) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:17481200‑M1/4‑1 (MQ=255) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:18901464‑M1/4‑1 (MQ=255) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:4028538‑M1/4‑1 (MQ=255) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:4106237/1‑68 (MQ=35) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:30344712/1‑68 (MQ=35) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:6904249/1‑68 (MQ=35) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:19115674/1‑68 (MQ=35) ctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgcg > 1:21961335‑M1/63‑67 (MQ=255) tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgcgc < 1:11502436‑M1/6‑1 (MQ=255) gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt < 1:16317735/67‑1 (MQ=35) gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt < 1:8033087/67‑1 (MQ=35) cgggcgcgaggtaacatccctgtaaacgcgccctcagcccacatccATGTGGGCTGAGGGCGCGtttt < 1:126407‑M2/22‑1 (MQ=255) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:2246022/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:32938769/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:29919095/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:22135118/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:26838236/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:21405693/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:20662552/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:10858017/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:6726697/67‑1 (MQ=35) aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg > 1:31119940/1‑68 (MQ=35) aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg > 1:27611077/1‑68 (MQ=35) aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg > 1:3901150/1‑68 (MQ=35) aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg > 1:23319978/1‑68 (MQ=35) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:20060245/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:12125763/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:14190355/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:19705848/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:21598627/68‑1 (MQ=33) cGCCGAGGCGTTCCCTGAAGGCGGTGGCAGCCCACATGGATGTGGGATGAGGGCGCGTTTTACAGGGa < 1:13945479/68‑1 (MQ=11) taacatccctgtaaaacgcgccctcagcccacatccATGTGGGCTGAGGGCGCGTTTTACAGGGAt < 1:23441827‑M2/30‑1 (MQ=255) acatccctgtaaaacgcgcccgcagcccacaaccATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTa < 1:9258231‑M2/34‑1 (MQ=255) tcccttacggctaccgggtcGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGCCCCGGTAGCCGTa < 1:32653696‑M1/48‑1 (MQ=255) cccttacggctaccgggtcGGGCGCGGTTTACAGGGATGTTACCTCGCGCCCGCCCCGGTAgccggaa < 1:5080718‑M1/49‑4 (MQ=255) cccttacggctaccgggtcGGGCGCGGTTTACAGGGATGTTACCTCGCGCCCGCCCCGGTAgccggaa < 1:9411488‑M1/49‑4 (MQ=255) tccATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGAt > 1:31379155‑M2/4‑68 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:28676781‑M2/1‑68 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAACCGTAAGGGATaa > 1:8557373‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACATGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:32250654‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:33835490‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:10050758‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:1138777‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:755365‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:7138555‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:4420309‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:15097629‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:22235773‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:28131447‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:2541219‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:30817611‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:27413740‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:31517725‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:7469277‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:23925390‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:28246953‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCCCCCGACCCGGTAGCCGTAAGGGATAAg > 1:16671631‑M2/1‑67 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:30714217‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:8262698‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:18539506‑M2/1‑68 (MQ=255) GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCg < 1:29812200‑M2/67‑1 (MQ=255) GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCg < 1:10238219‑M2/67‑1 (MQ=255) GGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAg > 1:22996670‑M2/1‑68 (MQ=255) GGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAg > 1:11907187‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGCgg > 1:6006863‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:128126‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:19430576‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:10676735‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:8903779‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:2926813‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:32034102‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:25250401‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:24480008‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:32123671‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:18242984‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:17104138‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:6267292‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:5372531‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:13035777‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:14813231‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:33173894‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:15463496‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:16081591‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:25947653‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:34393436‑M2/1‑68 (MQ=255) GGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc < 1:28535102‑M1/68‑1 (MQ=255) GGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAc > 1:7289843‑M1/1‑67 (MQ=255) | GTTGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC > CP009273/910482‑910616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |