| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1264586 = | NA (NA) | 4 (0.010) | 4/100 | NT | 28.9% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264610 = | 11 (0.030) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
Only 100 of 485 total aligned reads displayed.
ACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG > CP009273/1264519‑1264615 | tcTTTTTTCTTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc < 1:34667467/67‑1 (MQ=255)aCTTTTTTCATGGGTGCCGTATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc < 1:30909595/68‑1 (MQ=255)aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc > 1:32878922/1‑68 (MQ=255)aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc > 1:32230401/1‑68 (MQ=255) cTTTTTTCTTCGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:5961717/68‑1 (MQ=255) cTTTTTTCATGGGTGGCGGATACAAAAAAGGCCGCAGGCTGTTACCACTGCGGCCGGTTTCGGGCGCa < 1:16038678/68‑1 (MQ=21) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc < 1:5702187/67‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:33740723/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:433514/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa > 1:13889454/1‑68 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa > 1:13357142/1‑68 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:18572795/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:3049145/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:11652058/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:19501151/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:20632360/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:1078239/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:21689439/68‑1 (MQ=255) ttttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCat < 1:27496540/68‑1 (MQ=255) ttttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCat < 1:26456737/68‑1 (MQ=255) ttttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCat < 1:21869696/68‑1 (MQ=255) tttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCata < 1:33387223/68‑1 (MQ=255) tttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCata < 1:15607364/68‑1 (MQ=255) ttttCCTGCTTGCCCCATACAAAAAAGGCCGCAGGCTGTTACCACTGCTTCCGGTTTCGGGCGCatat < 1:26154245/68‑1 (MQ=14) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat < 1:14441518/68‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat < 1:20920957/68‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat < 1:22492676/68‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat < 1:11901022/68‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat > 1:13690259/1‑68 (MQ=255) ttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt > 1:5538441/1‑67 (MQ=255) ttCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt > 1:19148616/1‑67 (MQ=255) cATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGcc > 1:26879960/1‑68 (MQ=255) cATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGcc > 1:28406348/1‑68 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:32734542/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:17741785/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:12852088/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:6638601/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:11029657/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:14617993/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:22325881/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCCGCAGGCGGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:24533618/68‑1 (MQ=255) aTGGGTGCCCGATACAAAAAAGGCCGCAGGCGGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:29433957/68‑1 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:10083191/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:20181516/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:13526318/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:4787150/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:11203783/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa > 1:8044859/1‑67 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCAt > 1:14195053/1‑68 (MQ=255) tGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCAGGTTTCGGGCGCATATTGCCa > 1:25952490/1‑67 (MQ=255) gggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:25361336/1‑68 (MQ=255) gggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc < 1:11415665/68‑1 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:2985284/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:15048189/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:3809252/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:17317999/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:10030305/1‑67 (MQ=255) gTGCCTGATACAAAAAATGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCa < 1:8822481/67‑1 (MQ=255) gTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCa < 1:31897190/67‑1 (MQ=255) tGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCAc < 1:27664509/67‑1 (MQ=255) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTTCGGCCGGTTTCGGGCGCATATTGCCATCACg < 1:7799918/67‑1 (MQ=255) gCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACg < 1:15434836/67‑1 (MQ=255) cGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGc < 1:16679272/67‑1 (MQ=255) cGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGc < 1:12618013/67‑1 (MQ=255) cGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGc < 1:31332391/67‑1 (MQ=255) tcaTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg < 1:23232061/66‑1 (MQ=255) ggATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCa > 1:14775909/1‑67 (MQ=255) gATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:9333292/1‑67 (MQ=40) gATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:28779204/1‑67 (MQ=40) gATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:33212121/1‑67 (MQ=40) gATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:28197231/1‑67 (MQ=40) caTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc < 1:30128942/67‑1 (MQ=39) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:19714865/1‑66 (MQ=39) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:15819975/1‑66 (MQ=39) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:23987588/1‑66 (MQ=39) aTACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGcc < 1:6993971/68‑1 (MQ=39) tACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGcc < 1:6358839/67‑1 (MQ=37) tACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGcc < 1:27162745/67‑1 (MQ=37) aCAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTg > 1:24983759/1‑68 (MQ=35) aCAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTg > 1:10330489/1‑68 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:3415030/1‑67 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:5083471/1‑67 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg < 1:9719498/68‑1 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg < 1:8122276/68‑1 (MQ=35) aacaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCAGATTGCCATCACGGCAGCCGGACg > 1:3980320/4‑67 (MQ=11) aaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:18017925/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGGCTGACGc > 1:23759249/1‑67 (MQ=25) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:16929841/68‑1 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:5202946/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:12492741/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:2858211/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:2286016/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:12937550/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:8685708/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:26631810/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:33555776/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCACATTGCCATCACGGCAGCCTGACGcc > 1:12279623/1‑68 (MQ=25) aaaGGCCGCAGGCTCTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:29160536/1‑67 (MQ=25) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg > 1:18624834/1‑68 (MQ=31) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg > 1:7420550/1‑68 (MQ=31) | ACTTTTTTCATGGGTGCCGGATACAAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG > CP009273/1264519‑1264615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |