| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1264586 = | NA (NA) | 4 (0.010) | 4/100 | NT | 28.9% | intergenic (+111/+38) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264610 = | 11 (0.030) | intergenic (+135/+14) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
Only 100 of 302 total aligned reads displayed.
AAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAG > CP009273/1264543‑1264677 | ttgccagctggtggcgtaaccggaagtaaggagaataggggcgtcaggctgccgtgatggcaatatgc < 1:4607231‑M2/1‑1 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:31022054‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:9318285‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:4854757‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:33375210‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:8166734‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:1218492‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:20039306‑M2/67‑67 (MQ=255) tgtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgc > 1:17644246‑M2/67‑67 (MQ=255) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:28007141/1‑67 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:19503246/1‑67 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGAc > 1:6372213/1‑67 (MQ=35) aaaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg < 1:22866849/68‑1 (MQ=35) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:7449811‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:1141275‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:20892924‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:12288046‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:19192172‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:5772430‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:24607824‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:1842900‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:18321585‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:13059808‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:24909901‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:1592351‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:6530043‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:3458864‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:1446857‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:26965423‑M2/3‑1 (MQ=255) gtcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcg > 1:3358896‑M2/66‑67 (MQ=255) gtcagctggtggcgtaaccggaagtaaggggaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:22498018‑M2/3‑1 (MQ=255) gtcagctggtggcgtaacaggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc < 1:23535587‑M2/3‑1 (MQ=255) aacaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCAGATTGCCATCACGGCAGCCGGACg > 1:3980320/4‑67 (MQ=11) aaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:13395321/1‑67 (MQ=35) aaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:109460/1‑67 (MQ=35) aaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:26097133/1‑67 (MQ=35) aaaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACg > 1:16544585/1‑67 (MQ=35) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:23249349‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:33909982‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:25281709‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:29953484‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:6905278‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:15062186‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:6998025‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:7194106‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:7794020‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:973883‑M2/65‑67 (MQ=255) tcagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgcgc > 1:8272488‑M2/65‑67 (MQ=255) acaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:10078023/66‑1 (MQ=14) aaaGGCCGCAGGCTGTTACCCCTGCGGCCTGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:33239602/68‑1 (MQ=25) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGGCTGACGc > 1:23759249/1‑67 (MQ=25) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGCCGc > 1:18576118/1‑67 (MQ=25) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:30050091/68‑1 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGcc < 1:16929841/68‑1 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:26631810/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:5202946/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:8685708/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:8120391/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:3607626/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:543833/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:12937550/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:1457801/1‑67 (MQ=35) aaaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:27558927/1‑67 (MQ=35) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGccc < 1:31219131‑M2/5‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:17901588‑M2/4‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:29071473‑M2/4‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:30552813‑M2/4‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:21612988‑M2/4‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:32980693‑M2/4‑1 (MQ=255) cagctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGcc < 1:13700815‑M2/4‑1 (MQ=255) aaGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGccc > 1:13497831/1‑68 (MQ=33) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:10281930‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:29609785‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:24294063‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:27036329‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:28485863‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:11102177‑M2/63‑68 (MQ=255) agctggtggcgtaaccggaagtaaggtgaaaacgggcgtcaggctgccgtgatggcaatatgCGCCCg > 1:28763870‑M2/63‑68 (MQ=255) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg > 1:27306631/1‑68 (MQ=31) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg < 1:32828291/68‑1 (MQ=31) aGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCg < 1:11599136/68‑1 (MQ=31) gctggtggcgtaaccggaagtaaggtgaaaacgggcgtcagtctgccgagatggcaatatgcgcccca > 1:15391287‑M2/62‑66 (MQ=255) ggcgtcaggctgccgtgatggcaatatgCGCAAGTTTTCACCTTACTTACGCTTACGCCACCAGCTg > 1:20297953‑M2/29‑67 (MQ=255) ggctgccgtgatggcaatatgCGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATc > 1:4075422‑M2/22‑66 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGc > 1:25036162‑M2/1‑37 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCa < 1:20390527‑M2/67‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCa < 1:22775034‑M2/67‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:18730076‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:5916813‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg < 1:21053541‑M2/68‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg < 1:15672214‑M2/68‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg < 1:14338472‑M2/68‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:34398573‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:34140105‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:32435691‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:12019725‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:3219445‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg > 1:31293495‑M2/1‑68 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg < 1:10496778‑M2/68‑1 (MQ=255) CGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAg < 1:29173169‑M2/68‑1 (MQ=255) | AAAAAAGGCCGCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCGTTTTCACCTTACTTCCGGTTACGCCACCAGCTGACAATCGCTGCGGTAATAATTCCCGCCAG > CP009273/1264543‑1264677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |