New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129188 (0.450)9 (0.030) 8/94 NT 5.1% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 178 (0.510)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 379 total aligned reads displayed.

CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAA  >  CP009273/1823063‑1823195
                                                                  |                                                                  
gacgcggctgtccatctgaccattcagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGccc                                                                    <  1:17010297‑M1/9‑1 (MQ=255)
cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                   <  1:226375/68‑1 (MQ=255)
cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                   <  1:8052129/68‑1 (MQ=255)
cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc                                                                   >  1:33720319/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:4112884/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:24823322/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:25391008/1‑68 (MQ=255)
    tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt                                                               >  1:19713666/1‑68 (MQ=255)
       ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGGCCCGCTTTTc                                                            >  1:25140705/1‑68 (MQ=255)
       ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTc                                                            >  1:15453928/1‑68 (MQ=255)
           cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc                                                         <  1:5311758/67‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                       <  1:18669162/68‑1 (MQ=255)
            gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa                                                       <  1:724869/68‑1 (MQ=255)
              tAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATa                                                     <  1:32925744/68‑1 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:7866821/1‑68 (MQ=255)
                 tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc                                                  >  1:14532572/1‑68 (MQ=255)
                      ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg                                             <  1:1316109‑M2/68‑3 (MQ=255)
                        cagtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACggcgggc                                           <  1:6707811‑M1/34‑1 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                          >  1:599893‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                          >  1:28390701‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:1747661‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:12113762‑M2/1‑63 (MQ=255)
                         tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                           >  1:13825796‑M2/1‑63 (MQ=255)
                          gtcggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGgcgc                                         <  1:21364494‑M1/36‑1 (MQ=255)
                          gACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgc                                         <  1:4955546‑M2/68‑7 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                        >  1:27373496‑M2/1‑60 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                        >  1:1184013‑M2/1‑60 (MQ=255)
                            cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                        >  1:26642783‑M2/1‑60 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagg                                      <  1:8894687‑M1/68‑31 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                      >  1:30022947‑M2/1‑59 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                      >  1:455496‑M2/1‑59 (MQ=255)
                             ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                      >  1:26910605‑M2/1‑59 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:34709493/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:4371453/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:21161685/67‑1 (MQ=255)
                               cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                     <  1:10323014/67‑1 (MQ=255)
                                   cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                >  1:26009171/1‑68 (MQ=255)
                                     gACGAGCAAGAAACGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcg                              >  1:20457104‑M1/1‑30 (MQ=255)
                                     gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                              >  1:22926259/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg                               <  1:12805546/65‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                             <  1:22949333/67‑1 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                            >  1:16589858/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                            >  1:20628313/1‑68 (MQ=255)
                                       cGAGCAAGAAACGCATCGCCCGGCGCCCCGCTTATCAGCAATACACGGCgggcgcagggcgatgcgtt                            >  1:6853527‑M2/1‑49 (MQ=255)
                                       cGACCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcg                              >  1:28063049‑M2/1‑49 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                       <  1:30964133/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                       <  1:32460208/68‑1 (MQ=255)
                                            aaGAAACGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                        >  1:34543320/1‑67 (MQ=255)
                                             cgAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATACACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:9263886/67‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:29275516/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:22245184/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:11497523/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:32707898/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:33041293/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:3584033/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:16116218/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:14685864/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:1355909/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:22413249/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:10010051/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:27788133/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:19112403/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:8453031/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:19505715/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:27131724/68‑1 (MQ=255)
                                             aGAAACGCATCGCCCTGCGCCCCGCTTATCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:14990397/68‑1 (MQ=255)
                                             aGAAACGCAGCGCCCTGCGCCCCGCTTTGCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                      <  1:28711084/68‑1 (MQ=255)
                                                 aCGCATCGCCCTGCGCCCgccgtttattgctgagaggcggggcgcagggcgatgcgtttcttgctcgt                  >  1:7557861‑M1/1‑18 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCTGGTGCAGCGTTGACCGGCtgtg                  >  1:29828950/1‑67 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                 <  1:6539016/68‑1 (MQ=255)
                                                  cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                 <  1:33363940/68‑1 (MQ=255)
                                                    cATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACa               >  1:28237793/1‑68 (MQ=255)
                                                     aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg              >  1:29425379‑M1/1‑14 (MQ=255)
                                                       gcaCCTGCGCCCCGCGTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAAc            <  1:18748708‑M1/65‑1 (MQ=255)
                                                        gCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggtt            >  1:24583855‑M1/1‑11 (MQ=255)
                                                         cccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttg           >  1:25102697‑M1/1‑10 (MQ=255)
                                                         cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           >  1:13694047/1‑67 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:17294705‑M1/66‑1 (MQ=255)
                                                         aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg           <  1:11095247‑M1/66‑1 (MQ=255)
                                                          ccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgcc         <  1:18234933‑M1/68‑60 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc         <  1:11694060‑M1/68‑1 (MQ=255)
                                                          CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc         <  1:31765905‑M1/68‑1 (MQ=255)
                                                            tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg        >  1:858334‑M1/1‑7 (MQ=255)
                                                            tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg        >  1:28463890‑M1/1‑7 (MQ=255)
                                                            TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:24017436‑M1/67‑1 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:9700972‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:1421482‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:30312549‑M1/1‑5 (MQ=255)
                                                              cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:20211581‑M1/1‑5 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:23839152‑M1/65‑1 (MQ=255)
                                                              CGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg        <  1:23151427‑M1/65‑1 (MQ=255)
                                                               gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca     >  1:32548662‑M1/1‑4 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:13319663‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:17865168‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:3223504‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:8316275‑M1/68‑1 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    >  1:21003129‑M1/1‑68 (MQ=255)
                                                               GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg    <  1:9407565‑M1/68‑1 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag    >  1:24541975‑M1/1‑3 (MQ=255)
                                                                cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag    >  1:9061956‑M1/1‑3 (MQ=255)
                                                                  |                                                                  
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAA  >  CP009273/1823063‑1823195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.