New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1823129188 (0.450)9 (0.030) 8/94 NT 5.1% coding (863/1479 nt) astD succinylglutamic semialdehyde dehydrogenase
?CP009273 = 1823150 178 (0.510)coding (842/1479 nt) astD succinylglutamic semialdehyde dehydrogenase

Only 100 of 334 total aligned reads displayed.

TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCG  >  CP009273/1823084‑1823215
                                                                  |                                                                 
   cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                               <  1:19881397‑M2/68‑5 (MQ=255)
   cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                               <  1:24144278‑M2/68‑5 (MQ=255)
   cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                >  1:9061956‑M2/1‑64 (MQ=255)
   cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg                                                                >  1:24541975‑M2/1‑64 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                              >  1:30312549‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg                                                              >  1:28390701‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                               >  1:12113762‑M2/1‑63 (MQ=255)
    tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc                                                               >  1:32548662‑M2/1‑63 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                            >  1:1184013‑M2/1‑60 (MQ=255)
       cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca                                                            >  1:27373496‑M2/1‑60 (MQ=255)
        ggcgtttgtcacagccggtcaacgctgcaCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAgg                                                          >  1:25673570‑M1/30‑68 (MQ=255)
        ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg                                                          >  1:30022947‑M2/1‑59 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                         <  1:17403214/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                         <  1:162381/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                         <  1:26140783/67‑1 (MQ=255)
          cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt                                                         <  1:17170503/67‑1 (MQ=255)
             ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg                                                     <  1:4098420/68‑1 (MQ=255)
             ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg                                                     <  1:18417653/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                    <  1:33215433/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc                                                    <  1:13743866/68‑1 (MQ=255)
              cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCCTTTCAGCAATACACGGCGGGCGCAGGTGCAGc                                                    <  1:25129859/68‑1 (MQ=255)
                gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                  >  1:22926259/1‑68 (MQ=255)
                gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                  >  1:26929274/1‑68 (MQ=255)
                gACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGt                                                  >  1:7002509/1‑68 (MQ=255)
                 aCGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                 >  1:23964018/1‑68 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCg                                                   <  1:12805546/65‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                 <  1:6831203/67‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                 <  1:7411381/67‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGtt                                                 <  1:22949333/67‑1 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                >  1:28201353/1‑68 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                >  1:17552266/1‑68 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                >  1:18879699/1‑68 (MQ=255)
                  cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                >  1:20628313/1‑68 (MQ=255)
                   gAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg                                                >  1:24876373/1‑67 (MQ=255)
                    aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGa                                               >  1:10483891/1‑67 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                           <  1:22294823/68‑1 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                           <  1:13256115/68‑1 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                           <  1:30964133/68‑1 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg                                           <  1:32460208/68‑1 (MQ=255)
                       aaGAAACGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCg                                            >  1:34543320/1‑67 (MQ=255)
                        aGAAACGCATCGCCCTGCTCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGTTGCAGCGTTGACCGGc                                          <  1:21336773/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:33771598/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:16633975/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:32707898/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:3584033/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:19505715/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:8755762/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:4413197/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:10010051/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:5287440/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:11497523/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:28694316/68‑1 (MQ=255)
                        aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc                                          <  1:29275516/68‑1 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcg                                       >  1:18007291‑M2/1‑40 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCCGCGTTGACCGGCtgt                                       >  1:1479754/1‑68 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                       >  1:19097008/1‑68 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                       >  1:8169061/1‑68 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt                                       >  1:22413097/1‑68 (MQ=255)
                           aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCggt                                       >  1:418025/1‑68 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtc                                     >  1:20457104‑M2/1‑38 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCTGGTGCAGCGTTGACCGGCtgtg                                      >  1:29828950/1‑67 (MQ=255)
                             cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                     <  1:34846176/68‑1 (MQ=255)
                             cGCAGCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa                                     <  1:8361228/68‑1 (MQ=255)
                                aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa                                  >  1:8515702/1‑68 (MQ=255)
                                   gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc                                >  1:23142700/1‑67 (MQ=255)
                                    cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                               >  1:28447509/1‑67 (MQ=255)
                                    aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                               <  1:795408‑M1/66‑1 (MQ=255)
                                    aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg                               <  1:11095247‑M1/66‑1 (MQ=255)
                                     CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                             <  1:31765905‑M1/68‑1 (MQ=255)
                                     CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                             <  1:31823612‑M1/68‑1 (MQ=255)
                                     CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc                             <  1:11694060‑M1/68‑1 (MQ=255)
                                        GCGCCCCGCTTCTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc                          >  1:23587957‑M1/1‑68 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                        >  1:13678679‑M1/1‑68 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                        <  1:13319663‑M1/68‑1 (MQ=255)
                                          GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg                        >  1:21003129‑M1/1‑68 (MQ=255)
                                           CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                       <  1:27750779‑M1/68‑1 (MQ=255)
                                            CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa                      >  1:15224068‑M1/1‑68 (MQ=255)
                                            CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa                       >  1:5193377‑M1/1‑67 (MQ=255)
                                               gCTTTTCCGCAATACACGGCGGGCGCAGGTGCCGAGTGGACCGGCTGGGACAAACGCCGACTGAATgt                   >  1:6568563/1‑67 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                   <  1:15793295/68‑1 (MQ=255)
                                               gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg                   >  1:17244267/1‑68 (MQ=255)
                                               gCTTTTCAGCAATAAAAGGCGGGCGCAGGTGCCGCGGGGACCGGCTGGGACAACCGCCGACTGAATgg                   >  1:6529318/1‑68 (MQ=255)
                                                 ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                  <  1:24671205/67‑1 (MQ=255)
                                                 ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                  <  1:12378304/67‑1 (MQ=255)
                                                 ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt                  <  1:32088038/67‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                <  1:33369428/68‑1 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                >  1:32256848/1‑68 (MQ=255)
                                                  tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa                <  1:13493289/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt             <  1:8778247/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt             <  1:5595710/68‑1 (MQ=255)
                                                     cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt             <  1:16933097/68‑1 (MQ=255)
                                                      aGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATg            >  1:27919718/1‑68 (MQ=255)
                                                       gCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg           >  1:29497050/1‑68 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGAc         >  1:22591490/1‑68 (MQ=255)
                                                         aaTAAACGGCGGGCGCAGGGGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATgg           <  1:21906035/66‑1 (MQ=255)
                                                            aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAg       >  1:6318459/1‑67 (MQ=255)
                                                             aaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc     <  1:9387231/68‑1 (MQ=255)
                                                              aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc     >  1:23333228/1‑67 (MQ=255)
                                                                ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg  <  1:14109601/68‑1 (MQ=255)
                                                                 gcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg  >  1:20081809/1‑67 (MQ=255)
                                                                  |                                                                 
TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCG  >  CP009273/1823084‑1823215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.