New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2499292338 (0.810)29 (0.080) 16/98 NT 8.0% coding (820/1086 nt) ypdF Xaa‑Pro aminopeptidase
?CP009273 = 2499321 372 (1.020)coding (791/1086 nt) ypdF Xaa‑Pro aminopeptidase

Only 100 of 589 total aligned reads displayed.

TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358
                                                                  |                                                                  
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:16245517/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:19570551/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:1757032/1‑67 (MQ=255)
 gCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGgcgc                                                                   >  1:26540989/1‑67 (MQ=255)
       aGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCAt                                                            <  1:15235750/68‑1 (MQ=255)
         cGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCg                                                          >  1:1919645/1‑68 (MQ=255)
           tGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTc                                                        >  1:5576259/1‑68 (MQ=255)
            gACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCa                                                       <  1:1342037/68‑1 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcagg                                                     >  1:23985331‑M1/1‑53 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:508082/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:13166478/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:1085563/1‑67 (MQ=255)
              ccGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:20466437/1‑67 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCaa                                                      >  1:21594379/1‑66 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:28573656/68‑1 (MQ=255)
               cGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAAcc                                                    <  1:19934222/68‑1 (MQ=255)
                     tATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACctgctg                                               >  1:21250370/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:31139735/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:29265331/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:16125793/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:31765121/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:11157840/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:24347974/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:34381065/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:13537109/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:11800105/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCa                                            >  1:12087814/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGAGGCATCGTCAACCTGCTGGCa                                            >  1:28855630/1‑67 (MQ=255)
                        gACCGAAATAGTCGCCATAACCTGCGTCTGTAATGACCCGGCGCGCGGCATCGTCCCCCTGCTGGCa                                            >  1:25883070/1‑67 (MQ=255)
                            gAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCa                                       <  1:8466308/68‑1 (MQ=255)
                              aaTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAc                                      <  1:4417863‑M2/67‑2 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:975501‑M2/67‑3 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:13886154‑M2/67‑3 (MQ=255)
                               aTAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcg                                     <  1:11324044‑M2/67‑3 (MQ=255)
                                 aGTCGCCATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccaggaggttgacgatgccgcgcgccg                                  >  1:14737471‑M1/1‑34 (MQ=255)
                                   tCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:9295275‑M2/1‑61 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:29565347‑M2/67‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:2718937‑M2/67‑8 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                >  1:22972672‑M2/1‑60 (MQ=255)
                                    cGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccggg                                <  1:22827227‑M2/67‑8 (MQ=255)
                                     gCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGc                              <  1:26233489/68‑1 (MQ=255)
                                      ccATAACCTGCTTCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtca                             >  1:11248921‑M1/1‑29 (MQ=255)
                                       cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                             >  1:15072117‑M2/1‑57 (MQ=255)
                                       cATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtca                             >  1:12443655‑M2/1‑57 (MQ=255)
                                            ccTGCTTCTGTAATTACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:31484871/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:10420598/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:33430217/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:27063848/1‑68 (MQ=255)
                                            ccTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgc                       >  1:27647841/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGCCCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:3072975‑M2/1‑51 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCAcgccgggtcattacaga                      >  1:16727352‑M2/1‑51 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:14503307/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:10285149/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:7172509/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:6630778/1‑68 (MQ=255)
                                             cTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATcgcg                      >  1:33762932/1‑68 (MQ=255)
                                                  tCTGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcag                 >  1:18372293‑M1/1‑17 (MQ=255)
                                                  tCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAt                 >  1:631089/1‑68 (MQ=255)
                                                    tGTAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggt               >  1:22035892‑M1/1‑15 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:11676270/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:26770516/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:7542116/68‑1 (MQ=255)
                                                     gTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgc              <  1:31857473/68‑1 (MQ=255)
                                                      tAATGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggtta             >  1:15935003‑M1/1‑13 (MQ=255)
                                                      tAATGACCCGGCGCGCGGCATCGTCACCCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAta                >  1:3628838/1‑64 (MQ=255)
                                                      tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:32943340/1‑65 (MQ=255)
                                                      tAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGAtt                >  1:2086489/1‑65 (MQ=255)
                                                       aaTGACCCGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttat            >  1:8979122‑M1/1‑12 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:24941896/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:33244782/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:32663452/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgct             >  1:28325548/1‑67 (MQ=255)
                                                       aaTGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATtgat             >  1:30174750/1‑65 (MQ=255)
                                                          gACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         <  1:16770351/68‑1 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:23646372‑M1/67‑61 (MQ=255)
                                                            cccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:34804860‑M1/1‑7 (MQ=255)
                                                            cccGGCGggcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        <  1:13667367‑M1/67‑61 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:34310093/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:19135226/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:22390548/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:25448523/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:32304962/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:17092481/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGa         >  1:4218567/1‑66 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg        <  1:14359538/67‑1 (MQ=255)
                                                            cccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAg        <  1:18270643/67‑1 (MQ=255)
                                                             ccGGCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcg        >  1:12974281‑M1/1‑6 (MQ=255)
                                                             ccGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCt      <  1:34031051/68‑1 (MQ=255)
                                                              cGGCGtgcgcttccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgact     <  1:6866380‑M1/68‑64 (MQ=255)
                                                              cGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtg     <  1:7281828/68‑1 (MQ=255)
                                                               ggCGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgacta    <  1:18504834‑M1/68‑65 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:12623067/68‑1 (MQ=255)
                                                               ggCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgt    <  1:34677391/68‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:15549588/67‑1 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:7887210/1‑67 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:12358568/1‑67 (MQ=255)
                                                                 cgcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   <  1:18713943/67‑1 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactatt  >  1:3921310‑M1/1‑2 (MQ=255)
                                                                 cGtgcgctgccagcaggttgacgatgccgcgcgccgggtcattacagaagcaggttatggcgactat   <  1:9070939‑M1/67‑66 (MQ=255)
                                                                  gcgcgGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCtgtg   >  1:5895627/1‑66 (MQ=255)
                                                                  |                                                                  
TGCCGATAGCGTGACCGGTGTTATGACCGAAATAGTCGCCATAACCTGCTTCTGTAATGACCCGGCGCGCGGCATCGTCAACCTGCTGGCAGCGCACGCCGGGGCGAATCGCGGAGATTGCTGCGAGCTGTGC  >  CP009273/2499226‑2499358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.